EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0021227 (Gene tree)
Gene ID: -
Gene Symbol: Pspc1
Alias: 5730470C09Rik|AI327109|AI449052|PSP1|Psp1
Full Name: paraspeckle protein 1
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 55475 bases
Position: chr14:49528741-49584215
Accession: 1913895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0039444	RRM_1	PF00076.22	3.5e-32	1	2
MGP_DBA2J_P0039444	RRM_1	PF00076.22	3.5e-32	2	2
MGP_DBA2J_P0039443	RRM_1	PF00076.22	4.9e-32	1	2
MGP_DBA2J_P0039443	RRM_1	PF00076.22	4.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0039446	-	601	-	MGP_DBA2J_P0039446	58 (aa)	-	-
MGP_DBA2J_T0039445	-	528	-	-	- (aa)	-	-
MGP_DBA2J_T0039444	-	2863	-	MGP_DBA2J_P0039444	466 (aa)	-	-
MGP_DBA2J_T0039443	-	2383	-	MGP_DBA2J_P0039443	523 (aa)	-	Q8R326

Gene Model

Click here to download MGP_DBA2J_G0021227's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0021227's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0021227	Pspc1	69	41.304	MGP_DBA2J_G0017327	Cirbp	68	34.247
MGP_DBA2J_G0021227	Pspc1	84	71.429	MGP_DBA2J_G0028601	Sfpq	55	65.891
MGP_DBA2J_G0021227	Pspc1	84	67.347	MGP_DBA2J_G0035767	Nono	81	65.285
MGP_DBA2J_G0021227	Pspc1	93	36.066	MGP_DBA2J_G0024506	Rbm4	77	33.036