EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0021631 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 13196 bases
Position: chr15:33502066-33515261
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0040574	PABP	PF00658.18	7.5e-32	1	1
MGP_DBA2J_P0040574	RRM_5	PF13893.6	2.4e-08	1	2
MGP_DBA2J_P0040574	RRM_5	PF13893.6	2.4e-08	2	2
MGP_DBA2J_P0040574	RRM_1	PF00076.22	1.4e-90	1	4
MGP_DBA2J_P0040574	RRM_1	PF00076.22	1.4e-90	2	4
MGP_DBA2J_P0040574	RRM_1	PF00076.22	1.4e-90	3	4
MGP_DBA2J_P0040574	RRM_1	PF00076.22	1.4e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0040577	-	866	-	-	- (aa)	-	-
MGP_DBA2J_T0040576	-	628	-	-	- (aa)	-	-
MGP_DBA2J_T0040575	-	721	-	-	- (aa)	-	-
MGP_DBA2J_T0040574	-	2595	XM_011245339	MGP_DBA2J_P0040574	636 (aa)	XP_011243641	P29341
MGP_DBA2J_T0040579	-	2888	-	-	- (aa)	-	-
MGP_DBA2J_T0040578	-	747	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0021631's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0021631's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0021631	Pabpc1	56	34.783	MGP_DBA2J_G0032905	Tial1	94	31.008
MGP_DBA2J_G0021631	Pabpc1	58	36.145	MGP_DBA2J_G0034286	Elavl3	92	36.145
MGP_DBA2J_G0021631	Pabpc1	58	64.607	MGP_DBA2J_G0035849	Pabpc5	95	64.463
MGP_DBA2J_G0021631	Pabpc1	58	37.349	MGP_DBA2J_G0028258	Elavl2	89	37.349
MGP_DBA2J_G0021631	Pabpc1	100	80.346	MGP_DBA2J_G0024202	Pabpc2	100	80.346
MGP_DBA2J_G0021631	Pabpc1	57	32.450	MGP_DBA2J_G0033155	Elavl1	95	32.450
MGP_DBA2J_G0021631	Pabpc1	57	39.344	MGP_DBA2J_G0027426	Sf3b4	68	39.344
MGP_DBA2J_G0021631	Pabpc1	59	67.493	MGP_DBA2J_G0027016	Pabpc4l	97	69.277
MGP_DBA2J_G0021631	Pabpc1	99	80.186	MGP_DBA2J_G0022975	Pabpc6	99	80.341
MGP_DBA2J_G0021631	Pabpc1	58	36.145	MGP_DBA2J_G0028389	Elavl4	88	36.145
MGP_DBA2J_G0021631	Pabpc1	57	38.095	MGP_DBA2J_G0030794	Tia1	87	38.095
MGP_DBA2J_G0021631	Pabpc1	98	61.635	MGP_DBA2J_G0026666	Pabpc1l	99	61.478
MGP_DBA2J_G0021631	Pabpc1	58	34.667	MGP_DBA2J_G0029813	Rbm19	62	34.667
MGP_DBA2J_G0021631	Pabpc1	98	78.165	MGP_DBA2J_G0028550	Pabpc4	100	94.175
MGP_DBA2J_G0021631	Pabpc1	51	34.884	MGP_DBA2J_G0025176	Celf2	57	35.714
MGP_DBA2J_G0021631	Pabpc1	97	78.205	MGP_DBA2J_G0026870	-	97	78.205