EuRBPDB

Description

Ensembl ID: MGP_DBA2J_G0023466 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 13277 bases
Position: chr17:33539164-33552440
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0047120	ResIII	PF04851.15	1e-07	1	1
MGP_DBA2J_P0047119	ResIII	PF04851.15	2.4e-07	1	1
MGP_DBA2J_P0047122	ResIII	PF04851.15	2.4e-07	1	1
MGP_DBA2J_P0047124	ResIII	PF04851.15	2.4e-07	1	1
MGP_DBA2J_P0047119	DEAD	PF00270.29	4.3e-38	1	1
MGP_DBA2J_P0047122	DEAD	PF00270.29	4.3e-38	1	1
MGP_DBA2J_P0047124	DEAD	PF00270.29	4.3e-38	1	1
MGP_DBA2J_P0047120	DEAD	PF00270.29	1.3e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0047121	-	1701	-	-	- (aa)	-	-
MGP_DBA2J_T0047120	-	759	-	MGP_DBA2J_P0047120	148 (aa)	-	-
MGP_DBA2J_T0047123	-	741	-	-	- (aa)	-	-
MGP_DBA2J_T0047122	-	2842	-	MGP_DBA2J_P0047122	428 (aa)	-	-
MGP_DBA2J_T0047124	-	1762	-	MGP_DBA2J_P0047124	428 (aa)	-	-
MGP_DBA2J_T0047119	-	1731	-	MGP_DBA2J_P0047119	428 (aa)	-	Q9Z1N5

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0023466	Ddx39b	99	36.424	MGP_DBA2J_G0026739	Ddx27	54	32.134
MGP_DBA2J_G0023466	Ddx39b	100	90.421	MGP_DBA2J_G0033656	Ddx39	100	90.421
MGP_DBA2J_G0023466	Ddx39b	99	37.162	MGP_DBA2J_G0030711	Gm8994	80	34.158
MGP_DBA2J_G0023466	Ddx39b	99	34.459	MGP_DBA2J_G0034348	Ddx25	82	31.773
MGP_DBA2J_G0023466	Ddx39b	99	40.816	MGP_DBA2J_G0022512	Eif4a2	90	38.649
MGP_DBA2J_G0023466	Ddx39b	99	37.162	MGP_DBA2J_G0033946	Ddx19b	81	31.328
MGP_DBA2J_G0023466	Ddx39b	99	35.811	MGP_DBA2J_G0031233	Ddx47	90	31.662
MGP_DBA2J_G0023466	Ddx39b	99	31.792	MGP_DBA2J_G0035380	Ddx3x	56	30.105
MGP_DBA2J_G0023466	Ddx39b	99	38.776	MGP_DBA2J_G0018381	Eif4a1	95	36.548
MGP_DBA2J_G0023466	Ddx39b	99	36.735	MGP_DBA2J_G0019310	Eif4a3	89	37.568
MGP_DBA2J_G0023466	Ddx39b	99	36.000	MGP_DBA2J_G0033520	Ddx49	97	32.759