EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0024202 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc2
Alias: Pabp|Pabp+|Pabp2
Full Name: poly(A) binding protein%2C cytoplasmic 2
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 2586 bases
Position: chr18:36564309-36566894
Accession: 1349723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0049260	PABP	PF00658.18	1.8e-21	1	1
MGP_DBA2J_P0049260	RRM_5	PF13893.6	8.4e-10	1	2
MGP_DBA2J_P0049260	RRM_5	PF13893.6	8.4e-10	2	2
MGP_DBA2J_P0049260	RRM_1	PF00076.22	2.1e-86	1	4
MGP_DBA2J_P0049260	RRM_1	PF00076.22	2.1e-86	2	4
MGP_DBA2J_P0049260	RRM_1	PF00076.22	2.1e-86	3	4
MGP_DBA2J_P0049260	RRM_1	PF00076.22	2.1e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0049260	-	2586	-	MGP_DBA2J_P0049260	628 (aa)	-	Q62029

Gene Model

Click here to download MGP_DBA2J_G0024202's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0024202's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0024202	Pabpc2	57	35.443	MGP_DBA2J_G0030794	Tia1	95	33.835
MGP_DBA2J_G0024202	Pabpc2	98	56.938	MGP_DBA2J_G0026666	Pabpc1l	99	56.938
MGP_DBA2J_G0024202	Pabpc2	98	73.077	MGP_DBA2J_G0026870	-	99	71.698
MGP_DBA2J_G0024202	Pabpc2	59	34.667	MGP_DBA2J_G0029813	Rbm19	70	34.667
MGP_DBA2J_G0024202	Pabpc2	59	34.940	MGP_DBA2J_G0028389	Elavl4	88	34.940
MGP_DBA2J_G0024202	Pabpc2	99	69.876	MGP_DBA2J_G0022975	Pabpc6	99	70.186
MGP_DBA2J_G0024202	Pabpc2	59	36.145	MGP_DBA2J_G0028258	Elavl2	89	36.145
MGP_DBA2J_G0024202	Pabpc2	61	34.940	MGP_DBA2J_G0034286	Elavl3	90	34.940
MGP_DBA2J_G0024202	Pabpc2	100	80.346	MGP_DBA2J_G0021631	Pabpc1	100	80.346
MGP_DBA2J_G0024202	Pabpc2	99	67.405	MGP_DBA2J_G0028550	Pabpc4	100	89.320
MGP_DBA2J_G0024202	Pabpc2	62	60.955	MGP_DBA2J_G0035849	Pabpc5	96	61.111
MGP_DBA2J_G0024202	Pabpc2	61	64.167	MGP_DBA2J_G0027016	Pabpc4l	95	68.098
MGP_DBA2J_G0024202	Pabpc2	58	38.068	MGP_DBA2J_G0027426	Sf3b4	68	38.068
MGP_DBA2J_G0024202	Pabpc2	50	35.036	MGP_DBA2J_G0032905	Tial1	92	32.500