EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0026642 (Gene tree)
Gene ID: -
Gene Symbol: Chd6
Alias: 5430439G14Rik|6330406J24Rik|CHD-6|Kiaa1335
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 171183 bases
Position: chr2:158649485-158820667
Accession: 1918639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0058732	ResIII	PF04851.15	4.2e-08	1	1
MGP_DBA2J_P0058728	ResIII	PF04851.15	2.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0058729	-	735	-	-	- (aa)	-	-
MGP_DBA2J_T0058728	-	10515	XM_006500181	MGP_DBA2J_P0058728	2711 (aa)	XP_011238078	A3KFM7
MGP_DBA2J_T0058738	-	5051	-	-	- (aa)	-	-
MGP_DBA2J_T0058734	-	3092	-	-	- (aa)	-	-
MGP_DBA2J_T0058735	-	616	-	-	- (aa)	-	-
MGP_DBA2J_T0058736	-	646	-	-	- (aa)	-	-
MGP_DBA2J_T0058737	-	675	-	MGP_DBA2J_P0058737	217 (aa)	-	-
MGP_DBA2J_T0058730	-	764	-	-	- (aa)	-	-
MGP_DBA2J_T0058731	-	3970	-	-	- (aa)	-	-
MGP_DBA2J_T0058732	-	3608	-	MGP_DBA2J_P0058732	1183 (aa)	-	-
MGP_DBA2J_T0058733	-	601	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0026642's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0026642's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0026642	Chd6	87	68.979	MGP_DBA2J_G0033742	Chd9	72	62.298
MGP_DBA2J_G0026642	Chd6	88	69.253	MGP_DBA2J_G0021122	Chd8	66	63.419
MGP_DBA2J_G0026642	Chd6	66	36.621	MGP_DBA2J_G0028994	Chd5	51	34.657
MGP_DBA2J_G0026642	Chd6	61	37.625	MGP_DBA2J_G0032194	Chd2	63	32.583
MGP_DBA2J_G0026642	Chd6	84	72.837	MGP_DBA2J_G0027855	Chd7	72	64.905