EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0026666 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 25775 bases
Position: chr2:161717641-161743415
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0058822	PABP	PF00658.18	1.8e-23	1	1
MGP_DBA2J_P0058822	RRM_5	PF13893.6	3.2e-17	1	3
MGP_DBA2J_P0058822	RRM_5	PF13893.6	3.2e-17	2	3
MGP_DBA2J_P0058822	RRM_5	PF13893.6	3.2e-17	3	3
MGP_DBA2J_P0058822	RRM_1	PF00076.22	3.5e-90	1	4
MGP_DBA2J_P0058822	RRM_1	PF00076.22	3.5e-90	2	4
MGP_DBA2J_P0058822	RRM_1	PF00076.22	3.5e-90	3	4
MGP_DBA2J_P0058822	RRM_1	PF00076.22	3.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0058822	-	2354	XM_006499825	MGP_DBA2J_P0058822	607 (aa)	XP_006499888	A2A5N3
MGP_DBA2J_T0058823	-	617	-	-	- (aa)	-	-
MGP_DBA2J_T0058824	-	438	-	-	- (aa)	-	-
MGP_DBA2J_T0058825	-	750	-	-	- (aa)	-	-
MGP_DBA2J_T0058826	-	328	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0026666's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0026666's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0026666	Pabpc1l	99	56.467	MGP_DBA2J_G0022975	Pabpc6	97	56.625
MGP_DBA2J_G0026666	Pabpc1l	59	30.818	MGP_DBA2J_G0035211	Rbms3	77	30.818
MGP_DBA2J_G0026666	Pabpc1l	60	35.057	MGP_DBA2J_G0027426	Sf3b4	68	35.028
MGP_DBA2J_G0026666	Pabpc1l	60	35.484	MGP_DBA2J_G0029813	Rbm19	72	36.066
MGP_DBA2J_G0026666	Pabpc1l	62	33.735	MGP_DBA2J_G0028389	Elavl4	89	33.735
MGP_DBA2J_G0026666	Pabpc1l	53	34.884	MGP_DBA2J_G0025176	Celf2	57	34.884
MGP_DBA2J_G0026666	Pabpc1l	57	34.118	MGP_DBA2J_G0027374	Celf3	67	32.857
MGP_DBA2J_G0026666	Pabpc1l	99	56.938	MGP_DBA2J_G0024202	Pabpc2	98	56.938
MGP_DBA2J_G0026666	Pabpc1l	63	38.889	MGP_DBA2J_G0034286	Elavl3	59	30.488
MGP_DBA2J_G0026666	Pabpc1l	99	61.201	MGP_DBA2J_G0028550	Pabpc4	100	78.641
MGP_DBA2J_G0026666	Pabpc1l	99	61.478	MGP_DBA2J_G0021631	Pabpc1	98	61.635
MGP_DBA2J_G0026666	Pabpc1l	59	60.736	MGP_DBA2J_G0027016	Pabpc4l	95	60.736
MGP_DBA2J_G0026666	Pabpc1l	97	61.413	MGP_DBA2J_G0026870	-	95	61.413
MGP_DBA2J_G0026666	Pabpc1l	64	34.940	MGP_DBA2J_G0028258	Elavl2	92	34.940
MGP_DBA2J_G0026666	Pabpc1l	53	39.759	MGP_DBA2J_G0017327	Cirbp	91	39.759
MGP_DBA2J_G0026666	Pabpc1l	64	57.022	MGP_DBA2J_G0035849	Pabpc5	96	56.944
MGP_DBA2J_G0026666	Pabpc1l	59	38.095	MGP_DBA2J_G0030794	Tia1	87	38.095