EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0027016 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 5993 bases
Position: chr3:43076805-43082797
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0060423	RRM_5	PF13893.6	1.6e-13	1	3
MGP_DBA2J_P0060423	RRM_5	PF13893.6	1.6e-13	2	3
MGP_DBA2J_P0060423	RRM_5	PF13893.6	1.6e-13	3	3
MGP_DBA2J_P0060424	RRM_5	PF13893.6	1.6e-13	1	3
MGP_DBA2J_P0060424	RRM_5	PF13893.6	1.6e-13	2	3
MGP_DBA2J_P0060424	RRM_5	PF13893.6	1.6e-13	3	3
MGP_DBA2J_P0060423	RRM_1	PF00076.22	4.7e-83	1	4
MGP_DBA2J_P0060423	RRM_1	PF00076.22	4.7e-83	2	4
MGP_DBA2J_P0060423	RRM_1	PF00076.22	4.7e-83	3	4
MGP_DBA2J_P0060423	RRM_1	PF00076.22	4.7e-83	4	4
MGP_DBA2J_P0060424	RRM_1	PF00076.22	4.7e-83	1	4
MGP_DBA2J_P0060424	RRM_1	PF00076.22	4.7e-83	2	4
MGP_DBA2J_P0060424	RRM_1	PF00076.22	4.7e-83	3	4
MGP_DBA2J_P0060424	RRM_1	PF00076.22	4.7e-83	4	4
MGP_DBA2J_P0060425	RRM_1	PF00076.22	1.8e-40	1	2
MGP_DBA2J_P0060425	RRM_1	PF00076.22	1.8e-40	2	2
MGP_DBA2J_P0060426	RRM_1	PF00076.22	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0060423	-	5222	XM_006500774	MGP_DBA2J_P0060423	370 (aa)	XP_006500837	A0A0A6YWT2
MGP_DBA2J_T0060426	-	468	-	MGP_DBA2J_P0060426	50 (aa)	-	-
MGP_DBA2J_T0060425	-	724	-	MGP_DBA2J_P0060425	172 (aa)	-	-
MGP_DBA2J_T0060424	-	5188	-	MGP_DBA2J_P0060424	370 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0027016's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0027016's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0027016	Pabpc4l	96	34.940	MGP_DBA2J_G0028258	Elavl2	89	34.940
MGP_DBA2J_G0027016	Pabpc4l	83	34.286	MGP_DBA2J_G0035350	Rbm3	90	35.385
MGP_DBA2J_G0027016	Pabpc4l	94	30.464	MGP_DBA2J_G0033155	Elavl1	91	30.464
MGP_DBA2J_G0027016	Pabpc4l	94	33.333	MGP_DBA2J_G0032905	Tial1	99	31.618
MGP_DBA2J_G0027016	Pabpc4l	65	34.211	MGP_DBA2J_G0025972	Celf1	57	37.879
MGP_DBA2J_G0027016	Pabpc4l	96	30.065	MGP_DBA2J_G0028389	Elavl4	70	35.484
MGP_DBA2J_G0027016	Pabpc4l	95	68.098	MGP_DBA2J_G0024202	Pabpc2	61	64.167
MGP_DBA2J_G0027016	Pabpc4l	89	31.875	MGP_DBA2J_G0028679	Trnau1ap	88	34.211
MGP_DBA2J_G0027016	Pabpc4l	96	36.145	MGP_DBA2J_G0034286	Elavl3	90	36.145
MGP_DBA2J_G0027016	Pabpc4l	97	57.865	MGP_DBA2J_G0035849	Pabpc5	96	57.967
MGP_DBA2J_G0027016	Pabpc4l	96	38.636	MGP_DBA2J_G0027426	Sf3b4	68	31.667
MGP_DBA2J_G0027016	Pabpc4l	98	70.552	MGP_DBA2J_G0028550	Pabpc4	100	69.000
MGP_DBA2J_G0027016	Pabpc4l	97	69.277	MGP_DBA2J_G0021631	Pabpc1	59	67.493
MGP_DBA2J_G0027016	Pabpc4l	98	64.497	MGP_DBA2J_G0022975	Pabpc6	58	64.497
MGP_DBA2J_G0027016	Pabpc4l	95	30.539	MGP_DBA2J_G0030794	Tia1	95	30.000
MGP_DBA2J_G0027016	Pabpc4l	95	60.736	MGP_DBA2J_G0026666	Pabpc1l	59	60.736