EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0027426 (Gene tree)
Gene ID: -
Gene Symbol: Sf3b4
Alias: 49kDa|SF3b49|SF3b50|Sap49
Full Name: splicing factor 3b%2C subunit 4
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 11503 bases
Position: chr3:93229623-93241125
Accession: 109580
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0062263	RRM_1	PF00076.22	4.3e-50	1	3
MGP_DBA2J_P0062263	RRM_1	PF00076.22	4.3e-50	2	3
MGP_DBA2J_P0062263	RRM_1	PF00076.22	4.3e-50	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0062263	-	2131	-	MGP_DBA2J_P0062263	495 (aa)	-	Q8QZY9
MGP_DBA2J_T0062264	-	437	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0027426's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0027426's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0027426	Sf3b4	68	39.344	MGP_DBA2J_G0021631	Pabpc1	57	39.344
MGP_DBA2J_G0027426	Sf3b4	65	30.000	MGP_DBA2J_G0030794	Tia1	86	37.931
MGP_DBA2J_G0027426	Sf3b4	68	35.028	MGP_DBA2J_G0026666	Pabpc1l	60	35.057
MGP_DBA2J_G0027426	Sf3b4	68	31.667	MGP_DBA2J_G0027016	Pabpc4l	96	38.636
MGP_DBA2J_G0027426	Sf3b4	68	38.068	MGP_DBA2J_G0024202	Pabpc2	58	38.068
MGP_DBA2J_G0027426	Sf3b4	70	36.986	MGP_DBA2J_G0028389	Elavl4	87	32.121
MGP_DBA2J_G0027426	Sf3b4	68	38.798	MGP_DBA2J_G0022975	Pabpc6	58	38.798
MGP_DBA2J_G0027426	Sf3b4	67	40.881	MGP_DBA2J_G0035849	Pabpc5	94	41.104