EuRBPDB

Description

Ensembl ID: MGP_DBA2J_G0027855 (Gene tree)
Gene ID: -
Gene Symbol: Chd7
Alias: A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis
Full Name: chromodomain helicase DNA binding protein 7
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 177487 bases
Position: chr4:5134271-5311757
Accession: 2444748
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0064343	ResIII	PF04851.15	4.5e-06	1	1
MGP_DBA2J_P0064344	ResIII	PF04851.15	4.5e-06	1	1
MGP_DBA2J_P0064343	BRK	PF07533.16	4.7e-37	1	2
MGP_DBA2J_P0064343	BRK	PF07533.16	4.7e-37	2	2
MGP_DBA2J_P0064344	BRK	PF07533.16	4.7e-37	1	2
MGP_DBA2J_P0064344	BRK	PF07533.16	4.7e-37	2	2
MGP_DBA2J_P0064346	BRK	PF07533.16	1.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0064346	-	3463	-	MGP_DBA2J_P0064346	941 (aa)	-	-
MGP_DBA2J_T0064347	-	8958	-	MGP_DBA2J_P0064347	2985 (aa)	-	-
MGP_DBA2J_T0064344	-	10216	-	MGP_DBA2J_P0064344	2986 (aa)	-	-
MGP_DBA2J_T0064345	-	458	-	MGP_DBA2J_P0064345	19 (aa)	-	-
MGP_DBA2J_T0064342	-	2381	-	MGP_DBA2J_P0064342	631 (aa)	-	-
MGP_DBA2J_T0064343	-	9445	-	MGP_DBA2J_P0064343	2986 (aa)	-	-
MGP_DBA2J_T0064341	-	4953	-	-	- (aa)	-	-
MGP_DBA2J_T0064348	-	741	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0027855	Chd7	72	64.905	MGP_DBA2J_G0026642	Chd6	84	72.837
MGP_DBA2J_G0027855	Chd7	67	62.500	MGP_DBA2J_G0021122	Chd8	79	65.302
MGP_DBA2J_G0027855	Chd7	94	54.334	MGP_DBA2J_G0033742	Chd9	83	69.649