EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0028389 (Gene tree)
Gene ID: -
Gene Symbol: Elavl4
Alias: Elav|Hud|PNEM
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 4 (Hu antigen D)
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 153752 bases
Position: chr4:106625570-106779321
Accession: 107427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0066679	RRM_5	PF13893.6	2.8e-13	1	2
MGP_DBA2J_P0066679	RRM_5	PF13893.6	2.8e-13	2	2
MGP_DBA2J_P0066675	RRM_5	PF13893.6	3.1e-13	1	2
MGP_DBA2J_P0066675	RRM_5	PF13893.6	3.1e-13	2	2
MGP_DBA2J_P0066680	RRM_5	PF13893.6	3.2e-13	1	2
MGP_DBA2J_P0066680	RRM_5	PF13893.6	3.2e-13	2	2
MGP_DBA2J_P0066678	RRM_5	PF13893.6	3.4e-13	1	2
MGP_DBA2J_P0066678	RRM_5	PF13893.6	3.4e-13	2	2
MGP_DBA2J_P0066681	RRM_5	PF13893.6	3.6e-13	1	2
MGP_DBA2J_P0066681	RRM_5	PF13893.6	3.6e-13	2	2
MGP_DBA2J_P0066677	RRM_5	PF13893.6	3.9e-13	1	2
MGP_DBA2J_P0066677	RRM_5	PF13893.6	3.9e-13	2	2
MGP_DBA2J_P0066676	RRM_5	PF13893.6	3.9e-13	1	2
MGP_DBA2J_P0066676	RRM_5	PF13893.6	3.9e-13	2	2
MGP_DBA2J_P0066679	RRM_1	PF00076.22	2.1e-65	1	3
MGP_DBA2J_P0066679	RRM_1	PF00076.22	2.1e-65	2	3
MGP_DBA2J_P0066679	RRM_1	PF00076.22	2.1e-65	3	3
MGP_DBA2J_P0066680	RRM_1	PF00076.22	2.4e-65	1	3
MGP_DBA2J_P0066680	RRM_1	PF00076.22	2.4e-65	2	3
MGP_DBA2J_P0066680	RRM_1	PF00076.22	2.4e-65	3	3
MGP_DBA2J_P0066675	RRM_1	PF00076.22	2.4e-65	1	3
MGP_DBA2J_P0066675	RRM_1	PF00076.22	2.4e-65	2	3
MGP_DBA2J_P0066675	RRM_1	PF00076.22	2.4e-65	3	3
MGP_DBA2J_P0066678	RRM_1	PF00076.22	2.5e-65	1	3
MGP_DBA2J_P0066678	RRM_1	PF00076.22	2.5e-65	2	3
MGP_DBA2J_P0066678	RRM_1	PF00076.22	2.5e-65	3	3
MGP_DBA2J_P0066681	RRM_1	PF00076.22	2.9e-65	1	3
MGP_DBA2J_P0066681	RRM_1	PF00076.22	2.9e-65	2	3
MGP_DBA2J_P0066681	RRM_1	PF00076.22	2.9e-65	3	3
MGP_DBA2J_P0066677	RRM_1	PF00076.22	2.9e-65	1	3
MGP_DBA2J_P0066677	RRM_1	PF00076.22	2.9e-65	2	3
MGP_DBA2J_P0066677	RRM_1	PF00076.22	2.9e-65	3	3
MGP_DBA2J_P0066676	RRM_1	PF00076.22	3e-65	1	3
MGP_DBA2J_P0066676	RRM_1	PF00076.22	3e-65	2	3
MGP_DBA2J_P0066676	RRM_1	PF00076.22	3e-65	3	3
MGP_DBA2J_P0066683	RRM_1	PF00076.22	1.2e-20	1	1
MGP_DBA2J_P0066685	RRM_1	PF00076.22	6.8e-13	1	1
MGP_DBA2J_P0066686	RRM_1	PF00076.22	9.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0066686	-	488	-	MGP_DBA2J_P0066686	92 (aa)	-	-
MGP_DBA2J_T0066684	-	464	-	-	- (aa)	-	-
MGP_DBA2J_T0066685	-	663	-	MGP_DBA2J_P0066685	94 (aa)	-	-
MGP_DBA2J_T0066675	-	3997	XM_006502793	MGP_DBA2J_P0066675	366 (aa)	XP_006502856	Q61701
MGP_DBA2J_T0066676	-	4149	-	MGP_DBA2J_P0066676	385 (aa)	-	-
MGP_DBA2J_T0066677	-	3799	-	MGP_DBA2J_P0066677	383 (aa)	-	-
MGP_DBA2J_T0066681	-	4024	-	MGP_DBA2J_P0066681	380 (aa)	-	-
MGP_DBA2J_T0066680	-	3775	-	MGP_DBA2J_P0066680	366 (aa)	-	-
MGP_DBA2J_T0066683	-	644	-	MGP_DBA2J_P0066683	137 (aa)	-	-
MGP_DBA2J_T0066682	-	869	-	-	- (aa)	-	-
MGP_DBA2J_T0066678	-	4107	-	MGP_DBA2J_P0066678	371 (aa)	-	-
MGP_DBA2J_T0066679	-	3761	-	MGP_DBA2J_P0066679	356 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0028389's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0028389's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0028389	Elavl4	74	33.708	MGP_DBA2J_G0035549	Rbmx	86	33.708
MGP_DBA2J_G0028389	Elavl4	54	33.784	MGP_DBA2J_G0016685	Rbm8a2	61	30.693
MGP_DBA2J_G0028389	Elavl4	72	35.821	MGP_DBA2J_G0030540	Tra2a	59	37.097
MGP_DBA2J_G0028389	Elavl4	78	40.741	MGP_DBA2J_G0025972	Celf1	62	40.741
MGP_DBA2J_G0028389	Elavl4	88	35.897	MGP_DBA2J_G0032905	Tial1	73	35.897
MGP_DBA2J_G0028389	Elavl4	87	32.121	MGP_DBA2J_G0027426	Sf3b4	70	36.986
MGP_DBA2J_G0028389	Elavl4	88	36.145	MGP_DBA2J_G0021631	Pabpc1	58	36.145
MGP_DBA2J_G0028389	Elavl4	88	38.272	MGP_DBA2J_G0024042	Celf4	91	35.802
MGP_DBA2J_G0028389	Elavl4	99	79.893	MGP_DBA2J_G0034286	Elavl3	99	80.323
MGP_DBA2J_G0028389	Elavl4	78	30.088	MGP_DBA2J_G0018758	Msi2	84	30.208
MGP_DBA2J_G0028389	Elavl4	70	38.889	MGP_DBA2J_G0017327	Cirbp	84	38.889
MGP_DBA2J_G0028389	Elavl4	94	35.897	MGP_DBA2J_G0030794	Tia1	98	32.895
MGP_DBA2J_G0028389	Elavl4	70	35.484	MGP_DBA2J_G0027016	Pabpc4l	96	30.065
MGP_DBA2J_G0028389	Elavl4	90	30.625	MGP_DBA2J_G0028550	Pabpc4	98	35.294
MGP_DBA2J_G0028389	Elavl4	88	32.468	MGP_DBA2J_G0022975	Pabpc6	60	32.468
MGP_DBA2J_G0028389	Elavl4	61	30.120	MGP_DBA2J_G0024506	Rbm4	52	30.120
MGP_DBA2J_G0028389	Elavl4	54	33.784	MGP_DBA2J_G0027446	Rbm8a	62	30.693
MGP_DBA2J_G0028389	Elavl4	85	40.741	MGP_DBA2J_G0027374	Celf3	61	40.741
MGP_DBA2J_G0028389	Elavl4	99	89.315	MGP_DBA2J_G0028258	Elavl2	100	89.751
MGP_DBA2J_G0028389	Elavl4	81	38.272	MGP_DBA2J_G0025176	Celf2	61	38.272
MGP_DBA2J_G0028389	Elavl4	58	31.646	MGP_DBA2J_G0035350	Rbm3	82	38.710
MGP_DBA2J_G0028389	Elavl4	66	42.373	MGP_DBA2J_G0017333	Dazap1	64	30.275
MGP_DBA2J_G0028389	Elavl4	57	37.037	MGP_DBA2J_G0029910	Snrnp35	59	33.803
MGP_DBA2J_G0028389	Elavl4	88	34.940	MGP_DBA2J_G0024202	Pabpc2	59	34.940
MGP_DBA2J_G0028389	Elavl4	85	40.741	MGP_DBA2J_G0034715	Celf6	95	35.802
MGP_DBA2J_G0028389	Elavl4	89	33.735	MGP_DBA2J_G0026666	Pabpc1l	62	33.735
MGP_DBA2J_G0028389	Elavl4	70	36.458	MGP_DBA2J_G0025607	Rbms1	53	32.773
MGP_DBA2J_G0028389	Elavl4	70	36.458	MGP_DBA2J_G0035211	Rbms3	83	37.097
MGP_DBA2J_G0028389	Elavl4	89	73.585	MGP_DBA2J_G0033155	Elavl1	98	73.585