EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0028550 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 4
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 37456 bases
Position: chr4:120328159-120365614
Accession: 2385206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0067370	PABP	PF00658.18	2.8e-31	1	1
MGP_DBA2J_P0067366	PABP	PF00658.18	2.9e-31	1	1
MGP_DBA2J_P0067367	PABP	PF00658.18	3.1e-31	1	1
MGP_DBA2J_P0067369	PABP	PF00658.18	3.3e-31	1	1
MGP_DBA2J_P0067370	RRM_5	PF13893.6	5.6e-09	1	2
MGP_DBA2J_P0067370	RRM_5	PF13893.6	5.6e-09	2	2
MGP_DBA2J_P0067366	RRM_5	PF13893.6	6.4e-09	1	2
MGP_DBA2J_P0067366	RRM_5	PF13893.6	6.4e-09	2	2
MGP_DBA2J_P0067367	RRM_5	PF13893.6	7.3e-09	1	2
MGP_DBA2J_P0067367	RRM_5	PF13893.6	7.3e-09	2	2
MGP_DBA2J_P0067369	RRM_5	PF13893.6	8.3e-09	1	1
MGP_DBA2J_P0067370	RRM_1	PF00076.22	4.3e-90	1	4
MGP_DBA2J_P0067370	RRM_1	PF00076.22	4.3e-90	2	4
MGP_DBA2J_P0067370	RRM_1	PF00076.22	4.3e-90	3	4
MGP_DBA2J_P0067370	RRM_1	PF00076.22	4.3e-90	4	4
MGP_DBA2J_P0067366	RRM_1	PF00076.22	4.9e-90	1	4
MGP_DBA2J_P0067366	RRM_1	PF00076.22	4.9e-90	2	4
MGP_DBA2J_P0067366	RRM_1	PF00076.22	4.9e-90	3	4
MGP_DBA2J_P0067366	RRM_1	PF00076.22	4.9e-90	4	4
MGP_DBA2J_P0067367	RRM_1	PF00076.22	5.5e-90	1	4
MGP_DBA2J_P0067367	RRM_1	PF00076.22	5.5e-90	2	4
MGP_DBA2J_P0067367	RRM_1	PF00076.22	5.5e-90	3	4
MGP_DBA2J_P0067367	RRM_1	PF00076.22	5.5e-90	4	4
MGP_DBA2J_P0067369	RRM_1	PF00076.22	6.3e-90	1	4
MGP_DBA2J_P0067369	RRM_1	PF00076.22	6.3e-90	2	4
MGP_DBA2J_P0067369	RRM_1	PF00076.22	6.3e-90	3	4
MGP_DBA2J_P0067369	RRM_1	PF00076.22	6.3e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0067372	-	692	-	-	- (aa)	-	-
MGP_DBA2J_T0067373	-	1146	-	-	- (aa)	-	-
MGP_DBA2J_T0067370	-	2508	-	MGP_DBA2J_P0067370	615 (aa)	-	-
MGP_DBA2J_T0067371	-	1944	-	MGP_DBA2J_P0067371	647 (aa)	-	-
MGP_DBA2J_T0067365	-	245	-	-	- (aa)	-	-
MGP_DBA2J_T0067367	-	2859	-	MGP_DBA2J_P0067367	644 (aa)	-	-
MGP_DBA2J_T0067366	-	2919	-	MGP_DBA2J_P0067366	631 (aa)	-	-
MGP_DBA2J_T0067369	-	2826	-	MGP_DBA2J_P0067369	660 (aa)	-	-
MGP_DBA2J_T0067368	-	2636	-	MGP_DBA2J_P0067368	103 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0028550's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0028550's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0028550	Pabpc4	100	78.641	MGP_DBA2J_G0026666	Pabpc1l	99	61.201
MGP_DBA2J_G0028550	Pabpc4	100	87.379	MGP_DBA2J_G0022975	Pabpc6	99	68.125
MGP_DBA2J_G0028550	Pabpc4	100	33.333	MGP_DBA2J_G0030794	Tia1	95	33.333
MGP_DBA2J_G0028550	Pabpc4	100	94.175	MGP_DBA2J_G0021631	Pabpc1	98	78.165
MGP_DBA2J_G0028550	Pabpc4	100	69.000	MGP_DBA2J_G0027016	Pabpc4l	98	70.552
MGP_DBA2J_G0028550	Pabpc4	67	33.803	MGP_DBA2J_G0024042	Celf4	62	33.028
MGP_DBA2J_G0028550	Pabpc4	100	36.765	MGP_DBA2J_G0033155	Elavl1	95	33.553
MGP_DBA2J_G0028550	Pabpc4	100	70.874	MGP_DBA2J_G0035849	Pabpc5	95	65.289
MGP_DBA2J_G0028550	Pabpc4	68	33.333	MGP_DBA2J_G0025972	Celf1	70	38.636
MGP_DBA2J_G0028550	Pabpc4	67	32.394	MGP_DBA2J_G0027374	Celf3	69	33.784
MGP_DBA2J_G0028550	Pabpc4	100	33.333	MGP_DBA2J_G0032905	Tial1	94	30.233
MGP_DBA2J_G0028550	Pabpc4	100	33.824	MGP_DBA2J_G0034286	Elavl3	92	33.735
MGP_DBA2J_G0028550	Pabpc4	68	31.944	MGP_DBA2J_G0025176	Celf2	59	37.500
MGP_DBA2J_G0028550	Pabpc4	68	37.500	MGP_DBA2J_G0035350	Rbm3	87	40.000
MGP_DBA2J_G0028550	Pabpc4	66	30.882	MGP_DBA2J_G0026256	Myef2	56	35.526
MGP_DBA2J_G0028550	Pabpc4	67	35.211	MGP_DBA2J_G0034715	Celf6	68	37.113
MGP_DBA2J_G0028550	Pabpc4	68	34.722	MGP_DBA2J_G0035549	Rbmx	77	37.662
MGP_DBA2J_G0028550	Pabpc4	77	36.709	MGP_DBA2J_G0019302	Rbfox3	67	39.130
MGP_DBA2J_G0028550	Pabpc4	100	89.320	MGP_DBA2J_G0024202	Pabpc2	99	67.405
MGP_DBA2J_G0028550	Pabpc4	98	35.294	MGP_DBA2J_G0028389	Elavl4	90	30.625
MGP_DBA2J_G0028550	Pabpc4	98	35.294	MGP_DBA2J_G0028258	Elavl2	89	34.940
MGP_DBA2J_G0028550	Pabpc4	97	80.000	MGP_DBA2J_G0026870	-	100	80.503
MGP_DBA2J_G0028550	Pabpc4	66	34.783	MGP_DBA2J_G0015878	Boll	60	34.722