EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0029593 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpd
Alias: Auf1|Hnrpd
Full Name: heterogeneous nuclear ribonucleoprotein D
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 26146 bases
Position: chr5:97827536-97853681
Accession: 101947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0072522	CBFNT	PF08143.11	1.2e-11	1	1
MGP_DBA2J_P0072520	CBFNT	PF08143.11	1.3e-11	1	1
MGP_DBA2J_P0072521	CBFNT	PF08143.11	1.6e-11	1	1
MGP_DBA2J_P0072519	CBFNT	PF08143.11	1.7e-11	1	1
MGP_DBA2J_P0072522	RRM_1	PF00076.22	7.4e-36	1	2
MGP_DBA2J_P0072522	RRM_1	PF00076.22	7.4e-36	2	2
MGP_DBA2J_P0072520	RRM_1	PF00076.22	8.9e-36	1	2
MGP_DBA2J_P0072520	RRM_1	PF00076.22	8.9e-36	2	2
MGP_DBA2J_P0072521	RRM_1	PF00076.22	1.2e-35	1	2
MGP_DBA2J_P0072521	RRM_1	PF00076.22	1.2e-35	2	2
MGP_DBA2J_P0072519	RRM_1	PF00076.22	1.4e-35	1	2
MGP_DBA2J_P0072519	RRM_1	PF00076.22	1.4e-35	2	2
MGP_DBA2J_P0072528	RRM_1	PF00076.22	2.3e-23	1	1
MGP_DBA2J_P0072529	RRM_1	PF00076.22	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0072519	-	6791	XM_006534735	MGP_DBA2J_P0072519	355 (aa)	XP_006534798	Q60668
MGP_DBA2J_T0072529	-	478	-	MGP_DBA2J_P0072529	25 (aa)	-	-
MGP_DBA2J_T0072528	-	493	-	MGP_DBA2J_P0072528	107 (aa)	-	-
MGP_DBA2J_T0072525	-	699	-	MGP_DBA2J_P0072525	131 (aa)	-	-
MGP_DBA2J_T0072524	-	737	-	MGP_DBA2J_P0072524	150 (aa)	-	-
MGP_DBA2J_T0072527	-	425	-	-	- (aa)	-	-
MGP_DBA2J_T0072526	-	1104	-	MGP_DBA2J_P0072526	86 (aa)	-	-
MGP_DBA2J_T0072521	-	1670	-	MGP_DBA2J_P0072521	336 (aa)	-	-
MGP_DBA2J_T0072520	-	2000	-	MGP_DBA2J_P0072520	306 (aa)	-	-
MGP_DBA2J_T0072523	-	1117	-	MGP_DBA2J_P0072523	215 (aa)	-	-
MGP_DBA2J_T0072522	-	1537	-	MGP_DBA2J_P0072522	287 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0029593's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0029593's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0029593	Hnrnpd	100	64.000	MGP_DBA2J_G0028942	Tardbp	77	38.194
MGP_DBA2J_G0029593	Hnrnpd	55	35.593	MGP_DBA2J_G0030794	Tia1	69	32.308
MGP_DBA2J_G0029593	Hnrnpd	51	36.364	MGP_DBA2J_G0026785	Rbm38	51	36.364
MGP_DBA2J_G0029593	Hnrnpd	97	44.545	MGP_DBA2J_G0030552	Hnrnpa2b1	72	41.148
MGP_DBA2J_G0029593	Hnrnpd	100	88.000	MGP_DBA2J_G0018102	Hnrnpab	79	72.052
MGP_DBA2J_G0029593	Hnrnpd	100	56.000	MGP_DBA2J_G0017333	Dazap1	98	41.935
MGP_DBA2J_G0029593	Hnrnpd	100	72.000	MGP_DBA2J_G0018758	Msi2	100	53.982
MGP_DBA2J_G0029593	Hnrnpd	84	36.559	MGP_DBA2J_G0017327	Cirbp	83	38.776
MGP_DBA2J_G0029593	Hnrnpd	71	33.333	MGP_DBA2J_G0019816	Slirp	70	33.333
MGP_DBA2J_G0029593	Hnrnpd	70	32.000	MGP_DBA2J_G0028258	Elavl2	58	31.169
MGP_DBA2J_G0029593	Hnrnpd	100	37.838	MGP_DBA2J_G0020459	Hnrnpa0	86	34.050
MGP_DBA2J_G0029593	Hnrnpd	57	31.884	MGP_DBA2J_G0029910	Snrnp35	51	35.484
MGP_DBA2J_G0029593	Hnrnpd	84	37.363	MGP_DBA2J_G0035549	Rbmx	83	43.750
MGP_DBA2J_G0029593	Hnrnpd	97	38.806	MGP_DBA2J_G0020675	Gm17190	66	36.885
MGP_DBA2J_G0029593	Hnrnpd	100	80.000	MGP_DBA2J_G0029595	Hnrnpdl	89	65.278
MGP_DBA2J_G0029593	Hnrnpd	100	68.000	MGP_DBA2J_G0029782	Msi1	59	49.485
MGP_DBA2J_G0029593	Hnrnpd	69	35.294	MGP_DBA2J_G0015878	Boll	51	34.783
MGP_DBA2J_G0029593	Hnrnpd	70	34.667	MGP_DBA2J_G0035350	Rbm3	80	36.709