EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0029656 (Gene tree)
Gene ID: -
Gene Symbol: Gfi1
Alias: AW495828|Gfi-1|Pal-1|Pal1
Full Name: growth factor independent 1
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 9369 bases
Position: chr5:105687726-105697094
Accession: 103170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0072816	zf-C2H2	PF00096.26	5e-28	1	6
MGP_DBA2J_P0072816	zf-C2H2	PF00096.26	5e-28	2	6
MGP_DBA2J_P0072816	zf-C2H2	PF00096.26	5e-28	3	6
MGP_DBA2J_P0072816	zf-C2H2	PF00096.26	5e-28	4	6
MGP_DBA2J_P0072816	zf-C2H2	PF00096.26	5e-28	5	6
MGP_DBA2J_P0072816	zf-C2H2	PF00096.26	5e-28	6	6
MGP_DBA2J_P0072817	zf-C2H2	PF00096.26	5e-28	1	6
MGP_DBA2J_P0072817	zf-C2H2	PF00096.26	5e-28	2	6
MGP_DBA2J_P0072817	zf-C2H2	PF00096.26	5e-28	3	6
MGP_DBA2J_P0072817	zf-C2H2	PF00096.26	5e-28	4	6
MGP_DBA2J_P0072817	zf-C2H2	PF00096.26	5e-28	5	6
MGP_DBA2J_P0072817	zf-C2H2	PF00096.26	5e-28	6	6
MGP_DBA2J_P0072818	zf-C2H2	PF00096.26	1.5e-27	1	6
MGP_DBA2J_P0072818	zf-C2H2	PF00096.26	1.5e-27	2	6
MGP_DBA2J_P0072818	zf-C2H2	PF00096.26	1.5e-27	3	6
MGP_DBA2J_P0072818	zf-C2H2	PF00096.26	1.5e-27	4	6
MGP_DBA2J_P0072818	zf-C2H2	PF00096.26	1.5e-27	5	6
MGP_DBA2J_P0072818	zf-C2H2	PF00096.26	1.5e-27	6	6
MGP_DBA2J_P0072819	zf-C2H2	PF00096.26	9.4e-25	1	4
MGP_DBA2J_P0072819	zf-C2H2	PF00096.26	9.4e-25	2	4
MGP_DBA2J_P0072819	zf-C2H2	PF00096.26	9.4e-25	3	4
MGP_DBA2J_P0072819	zf-C2H2	PF00096.26	9.4e-25	4	4
MGP_DBA2J_P0072819	zf-met	PF12874.7	2.2e-08	1	1
MGP_DBA2J_P0072816	zf-met	PF12874.7	2.5e-07	1	1
MGP_DBA2J_P0072817	zf-met	PF12874.7	2.5e-07	1	1
MGP_DBA2J_P0072818	zf-met	PF12874.7	4.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0072819	-	1482	-	MGP_DBA2J_P0072819	135 (aa)	-	-
MGP_DBA2J_T0072818	-	2639	-	MGP_DBA2J_P0072818	489 (aa)	-	-
MGP_DBA2J_T0072820	-	689	-	MGP_DBA2J_P0072820	186 (aa)	-	-
MGP_DBA2J_T0072817	-	2860	-	MGP_DBA2J_P0072817	423 (aa)	-	-
MGP_DBA2J_T0072816	-	2648	XM_006534791	MGP_DBA2J_P0072816	423 (aa)	XP_006534854	A0A0R4J292

Gene Model

Click here to download MGP_DBA2J_G0029656's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0029656's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0029656	Gfi1	100	45.238	MGP_DBA2J_G0018235	Zfp867	79	43.023
MGP_DBA2J_G0029656	Gfi1	100	47.863	MGP_DBA2J_G0026725	Zfp334	62	47.651
MGP_DBA2J_G0029656	Gfi1	100	48.031	MGP_DBA2J_G0031640	Zfp235	61	46.377
MGP_DBA2J_G0029656	Gfi1	100	49.606	MGP_DBA2J_G0031641	Zfp114	58	48.447
MGP_DBA2J_G0029656	Gfi1	100	50.000	MGP_DBA2J_G0031642	Zfp111	74	50.000
MGP_DBA2J_G0029656	Gfi1	100	50.427	MGP_DBA2J_G0031644	Zfp108	68	50.427
MGP_DBA2J_G0029656	Gfi1	100	46.457	MGP_DBA2J_G0031647	Zfp94	65	44.970
MGP_DBA2J_G0029656	Gfi1	99	47.287	MGP_DBA2J_G0030518	Repin1	90	47.287
MGP_DBA2J_G0029656	Gfi1	100	48.031	MGP_DBA2J_G0020547	Zfp748	92	48.447
MGP_DBA2J_G0029656	Gfi1	100	46.094	MGP_DBA2J_G0033586	Zfp882	85	46.094
MGP_DBA2J_G0029656	Gfi1	100	44.882	MGP_DBA2J_G0031941	Zfp715	63	43.210
MGP_DBA2J_G0029656	Gfi1	100	39.535	MGP_DBA2J_G0033798	Zfp319	93	40.116
MGP_DBA2J_G0029656	Gfi1	100	46.018	MGP_DBA2J_G0020530	Zfp759	88	46.018
MGP_DBA2J_G0029656	Gfi1	100	48.507	MGP_DBA2J_G0031811	Zfp420	98	48.507
MGP_DBA2J_G0029656	Gfi1	100	46.739	MGP_DBA2J_G0024436	Zfp236	54	46.739
MGP_DBA2J_G0029656	Gfi1	100	44.030	MGP_DBA2J_G0034293	Zfp872	78	44.030
MGP_DBA2J_G0029656	Gfi1	100	43.609	MGP_DBA2J_G0018421	Bcl6b	50	40.361
MGP_DBA2J_G0029656	Gfi1	99	45.038	MGP_DBA2J_G0032858	E430018J23Rik	60	42.197
MGP_DBA2J_G0029656	Gfi1	100	47.788	MGP_DBA2J_G0020529	Rslcan18	71	47.788
MGP_DBA2J_G0029656	Gfi1	100	48.276	MGP_DBA2J_G0018185	Zfp672	90	48.276
MGP_DBA2J_G0029656	Gfi1	100	45.794	MGP_DBA2J_G0018088	Zfp454	68	42.262
MGP_DBA2J_G0029656	Gfi1	99	47.368	MGP_DBA2J_G0031396	Zfp865	63	47.368
MGP_DBA2J_G0029656	Gfi1	100	43.590	MGP_DBA2J_G0030998	Zfp637	71	43.590
MGP_DBA2J_G0029656	Gfi1	99	45.133	MGP_DBA2J_G0030651	Prdm5	74	43.846
MGP_DBA2J_G0029656	Gfi1	100	49.219	MGP_DBA2J_G0029321	Zbtb49	62	51.786
MGP_DBA2J_G0029656	Gfi1	99	44.444	MGP_DBA2J_G0031399	Zfp784	71	44.444
MGP_DBA2J_G0029656	Gfi1	99	45.714	MGP_DBA2J_G0031677	Zfp574	61	43.925
MGP_DBA2J_G0029656	Gfi1	99	48.507	MGP_DBA2J_G0026296	Zfp661	62	48.507
MGP_DBA2J_G0029656	Gfi1	100	46.457	MGP_DBA2J_G0033957	Zfp1	60	43.478
MGP_DBA2J_G0029656	Gfi1	100	47.368	MGP_DBA2J_G0026763	Zfp64	70	38.298
MGP_DBA2J_G0029656	Gfi1	100	49.254	MGP_DBA2J_G0021844	Zfp251	67	49.254
MGP_DBA2J_G0029656	Gfi1	100	42.857	MGP_DBA2J_G0023091	Zscan10	85	42.771
MGP_DBA2J_G0029656	Gfi1	99	44.275	MGP_DBA2J_G0032859	-	79	44.444
MGP_DBA2J_G0029656	Gfi1	100	45.312	MGP_DBA2J_G0023062	Zfp677	82	43.195
MGP_DBA2J_G0029656	Gfi1	100	46.269	MGP_DBA2J_G0023064	Zfp51	74	44.828
MGP_DBA2J_G0029656	Gfi1	100	54.321	MGP_DBA2J_G0032855	Zfp768	51	45.517
MGP_DBA2J_G0029656	Gfi1	100	48.031	MGP_DBA2J_G0031748	Zfp974	89	48.031