EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0029782 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 26688 bases
Position: chr5:113672969-113699656
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0073426	RRM_1	PF00076.22	6.9e-33	1	2
MGP_DBA2J_P0073426	RRM_1	PF00076.22	6.9e-33	2	2
MGP_DBA2J_P0073427	RRM_1	PF00076.22	1.6e-28	1	2
MGP_DBA2J_P0073427	RRM_1	PF00076.22	1.6e-28	2	2
MGP_DBA2J_P0073431	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0073430	-	581	-	-	- (aa)	-	-
MGP_DBA2J_T0073429	-	806	-	-	- (aa)	-	-
MGP_DBA2J_T0073428	-	367	-	-	- (aa)	-	-
MGP_DBA2J_T0073427	-	807	-	MGP_DBA2J_P0073427	268 (aa)	-	-
MGP_DBA2J_T0073426	-	2988	-	MGP_DBA2J_P0073426	362 (aa)	-	-
MGP_DBA2J_T0073425	-	2626	-	-	- (aa)	-	-
MGP_DBA2J_T0073432	-	596	-	-	- (aa)	-	-
MGP_DBA2J_T0073431	-	726	-	MGP_DBA2J_P0073431	196 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0029782's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0029782's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0029782	Msi1	59	49.485	MGP_DBA2J_G0029593	Hnrnpd	100	68.000
MGP_DBA2J_G0029782	Msi1	58	48.052	MGP_DBA2J_G0029595	Hnrnpdl	75	39.676
MGP_DBA2J_G0029782	Msi1	57	42.949	MGP_DBA2J_G0020459	Hnrnpa0	59	43.646
MGP_DBA2J_G0029782	Msi1	59	39.080	MGP_DBA2J_G0022268	Hnrnpa1	62	39.080
MGP_DBA2J_G0029782	Msi1	62	34.021	MGP_DBA2J_G0028942	Tardbp	79	34.021
MGP_DBA2J_G0029782	Msi1	56	41.379	MGP_DBA2J_G0032905	Tial1	69	31.469
MGP_DBA2J_G0029782	Msi1	58	48.052	MGP_DBA2J_G0018102	Hnrnpab	79	40.800
MGP_DBA2J_G0029782	Msi1	61	51.064	MGP_DBA2J_G0026785	Rbm38	66	46.809
MGP_DBA2J_G0029782	Msi1	88	42.308	MGP_DBA2J_G0017333	Dazap1	98	44.311
MGP_DBA2J_G0029782	Msi1	61	43.750	MGP_DBA2J_G0030552	Hnrnpa2b1	91	41.379
MGP_DBA2J_G0029782	Msi1	99	75.665	MGP_DBA2J_G0018758	Msi2	100	90.323
MGP_DBA2J_G0029782	Msi1	51	38.983	MGP_DBA2J_G0017327	Cirbp	87	40.351