EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0030177 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf4
Alias: 30kDa|C79664|Cpsf30
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 14993 bases
Position: chr5:143841351-143856343
Accession: 1861602
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0075585	zf-CCCH	PF00642.24	1.1e-20	1	2
MGP_DBA2J_P0075585	zf-CCCH	PF00642.24	1.1e-20	2	2
MGP_DBA2J_P0075580	zf-CCCH	PF00642.24	3e-20	1	2
MGP_DBA2J_P0075580	zf-CCCH	PF00642.24	3e-20	2	2
MGP_DBA2J_P0075583	zf-CCCH	PF00642.24	3.1e-20	1	2
MGP_DBA2J_P0075583	zf-CCCH	PF00642.24	3.1e-20	2	2
MGP_DBA2J_P0075582	zf-CCCH	PF00642.24	5.9e-20	1	2
MGP_DBA2J_P0075582	zf-CCCH	PF00642.24	5.9e-20	2	2
MGP_DBA2J_P0075581	zf-CCCH	PF00642.24	2.4e-15	1	2
MGP_DBA2J_P0075581	zf-CCCH	PF00642.24	2.4e-15	2	2
MGP_DBA2J_P0075581	zf-CCHC	PF00098.23	5.5e-06	1	1
MGP_DBA2J_P0075580	zf-CCHC	PF00098.23	6.6e-06	1	1
MGP_DBA2J_P0075583	zf-CCHC	PF00098.23	6.7e-06	1	1
MGP_DBA2J_P0075582	zf-CCHC	PF00098.23	7.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0075582	-	1774	-	MGP_DBA2J_P0075582	269 (aa)	-	-
MGP_DBA2J_T0075583	-	1405	-	MGP_DBA2J_P0075583	244 (aa)	-	-
MGP_DBA2J_T0075580	-	1731	XM_006504845	MGP_DBA2J_P0075580	243 (aa)	XP_006504908	Q8BQZ5
MGP_DBA2J_T0075581	-	1624	-	MGP_DBA2J_P0075581	211 (aa)	-	-
MGP_DBA2J_T0075586	-	2985	-	-	- (aa)	-	-
MGP_DBA2J_T0075584	-	1219	-	MGP_DBA2J_P0075584	62 (aa)	-	-
MGP_DBA2J_T0075585	-	850	-	MGP_DBA2J_P0075585	207 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0030177's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0030177's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0030177	Cpsf4	86	52.358	MGP_DBA2J_G0019186	Cpsf4l	82	62.400