EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0030651 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 157043 bases
Position: chr6:62546019-62703061
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0077643	zf-C2H2	PF00096.26	5.7e-59	1	9
MGP_DBA2J_P0077643	zf-C2H2	PF00096.26	5.7e-59	2	9
MGP_DBA2J_P0077643	zf-C2H2	PF00096.26	5.7e-59	3	9
MGP_DBA2J_P0077643	zf-C2H2	PF00096.26	5.7e-59	4	9
MGP_DBA2J_P0077643	zf-C2H2	PF00096.26	5.7e-59	5	9
MGP_DBA2J_P0077643	zf-C2H2	PF00096.26	5.7e-59	6	9
MGP_DBA2J_P0077643	zf-C2H2	PF00096.26	5.7e-59	7	9
MGP_DBA2J_P0077643	zf-C2H2	PF00096.26	5.7e-59	8	9
MGP_DBA2J_P0077643	zf-C2H2	PF00096.26	5.7e-59	9	9
MGP_DBA2J_P0077638	zf-C2H2	PF00096.26	1e-58	1	9
MGP_DBA2J_P0077638	zf-C2H2	PF00096.26	1e-58	2	9
MGP_DBA2J_P0077638	zf-C2H2	PF00096.26	1e-58	3	9
MGP_DBA2J_P0077638	zf-C2H2	PF00096.26	1e-58	4	9
MGP_DBA2J_P0077638	zf-C2H2	PF00096.26	1e-58	5	9
MGP_DBA2J_P0077638	zf-C2H2	PF00096.26	1e-58	6	9
MGP_DBA2J_P0077638	zf-C2H2	PF00096.26	1e-58	7	9
MGP_DBA2J_P0077638	zf-C2H2	PF00096.26	1e-58	8	9
MGP_DBA2J_P0077638	zf-C2H2	PF00096.26	1e-58	9	9
MGP_DBA2J_P0077641	zf-C2H2	PF00096.26	1e-48	1	9
MGP_DBA2J_P0077641	zf-C2H2	PF00096.26	1e-48	2	9
MGP_DBA2J_P0077641	zf-C2H2	PF00096.26	1e-48	3	9
MGP_DBA2J_P0077641	zf-C2H2	PF00096.26	1e-48	4	9
MGP_DBA2J_P0077641	zf-C2H2	PF00096.26	1e-48	5	9
MGP_DBA2J_P0077641	zf-C2H2	PF00096.26	1e-48	6	9
MGP_DBA2J_P0077641	zf-C2H2	PF00096.26	1e-48	7	9
MGP_DBA2J_P0077641	zf-C2H2	PF00096.26	1e-48	8	9
MGP_DBA2J_P0077641	zf-C2H2	PF00096.26	1e-48	9	9
MGP_DBA2J_P0077640	zf-C2H2	PF00096.26	8.1e-27	1	5
MGP_DBA2J_P0077640	zf-C2H2	PF00096.26	8.1e-27	2	5
MGP_DBA2J_P0077640	zf-C2H2	PF00096.26	8.1e-27	3	5
MGP_DBA2J_P0077640	zf-C2H2	PF00096.26	8.1e-27	4	5
MGP_DBA2J_P0077640	zf-C2H2	PF00096.26	8.1e-27	5	5
MGP_DBA2J_P0077643	zf-met	PF12874.7	1.5e-20	1	3
MGP_DBA2J_P0077643	zf-met	PF12874.7	1.5e-20	2	3
MGP_DBA2J_P0077643	zf-met	PF12874.7	1.5e-20	3	3
MGP_DBA2J_P0077638	zf-met	PF12874.7	2.7e-20	1	3
MGP_DBA2J_P0077638	zf-met	PF12874.7	2.7e-20	2	3
MGP_DBA2J_P0077638	zf-met	PF12874.7	2.7e-20	3	3
MGP_DBA2J_P0077641	zf-met	PF12874.7	8.8e-17	1	3
MGP_DBA2J_P0077641	zf-met	PF12874.7	8.8e-17	2	3
MGP_DBA2J_P0077641	zf-met	PF12874.7	8.8e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0077638	-	2155	XM_006506600	MGP_DBA2J_P0077638	599 (aa)	XP_006506663	Q9CXE0
MGP_DBA2J_T0077639	-	1913	-	-	- (aa)	-	-
MGP_DBA2J_T0077644	-	1920	-	-	- (aa)	-	-
MGP_DBA2J_T0077643	-	1740	-	MGP_DBA2J_P0077643	579 (aa)	-	-
MGP_DBA2J_T0077642	-	3970	-	-	- (aa)	-	-
MGP_DBA2J_T0077641	-	1488	-	MGP_DBA2J_P0077641	415 (aa)	-	-
MGP_DBA2J_T0077640	-	984	-	MGP_DBA2J_P0077640	221 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0030651's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0030651's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0030651	Prdm5	69	47.857	MGP_DBA2J_G0031639	Zfp112	68	39.711
MGP_DBA2J_G0030651	Prdm5	91	48.387	MGP_DBA2J_G0031811	Zfp420	95	41.722
MGP_DBA2J_G0030651	Prdm5	76	40.000	MGP_DBA2J_G0018821	Zfp652	50	36.242
MGP_DBA2J_G0030651	Prdm5	72	48.760	MGP_DBA2J_G0031941	Zfp715	66	39.333
MGP_DBA2J_G0030651	Prdm5	84	36.243	MGP_DBA2J_G0020547	Zfp748	92	39.735
MGP_DBA2J_G0030651	Prdm5	90	42.609	MGP_DBA2J_G0033586	Zfp882	94	35.714
MGP_DBA2J_G0030651	Prdm5	88	42.857	MGP_DBA2J_G0018185	Zfp672	86	44.286
MGP_DBA2J_G0030651	Prdm5	79	40.244	MGP_DBA2J_G0029321	Zbtb49	96	45.070
MGP_DBA2J_G0030651	Prdm5	84	32.735	MGP_DBA2J_G0031396	Zfp865	78	32.895
MGP_DBA2J_G0030651	Prdm5	74	40.104	MGP_DBA2J_G0031388	Zfp628	60	38.208
MGP_DBA2J_G0030651	Prdm5	67	50.847	MGP_DBA2J_G0033957	Zfp1	67	40.167
MGP_DBA2J_G0030651	Prdm5	68	48.544	MGP_DBA2J_G0034040	Snai3	55	42.336
MGP_DBA2J_G0030651	Prdm5	78	38.571	MGP_DBA2J_G0018088	Zfp454	68	38.571
MGP_DBA2J_G0030651	Prdm5	61	45.045	MGP_DBA2J_G0026063	Wt1	55	40.876
MGP_DBA2J_G0030651	Prdm5	74	43.846	MGP_DBA2J_G0029656	Gfi1	99	45.133
MGP_DBA2J_G0030651	Prdm5	87	46.739	MGP_DBA2J_G0024436	Zfp236	77	43.860
MGP_DBA2J_G0030651	Prdm5	78	36.184	MGP_DBA2J_G0031748	Zfp974	88	37.354
MGP_DBA2J_G0030651	Prdm5	93	45.185	MGP_DBA2J_G0026725	Zfp334	67	40.000
MGP_DBA2J_G0030651	Prdm5	84	43.277	MGP_DBA2J_G0020529	Rslcan18	71	38.800
MGP_DBA2J_G0030651	Prdm5	81	42.941	MGP_DBA2J_G0026296	Zfp661	65	42.941
MGP_DBA2J_G0030651	Prdm5	82	40.076	MGP_DBA2J_G0034293	Zfp872	99	40.530
MGP_DBA2J_G0030651	Prdm5	68	42.361	MGP_DBA2J_G0030518	Repin1	84	42.069
MGP_DBA2J_G0030651	Prdm5	87	49.194	MGP_DBA2J_G0031642	Zfp111	70	41.528
MGP_DBA2J_G0030651	Prdm5	86	45.000	MGP_DBA2J_G0031641	Zfp114	54	39.273
MGP_DBA2J_G0030651	Prdm5	74	48.913	MGP_DBA2J_G0031647	Zfp94	73	48.913
MGP_DBA2J_G0030651	Prdm5	68	47.826	MGP_DBA2J_G0031646	Zfp61	53	41.525
MGP_DBA2J_G0030651	Prdm5	70	45.000	MGP_DBA2J_G0018421	Bcl6b	57	39.375
MGP_DBA2J_G0030651	Prdm5	90	35.235	MGP_DBA2J_G0023091	Zscan10	88	44.915
MGP_DBA2J_G0030651	Prdm5	75	34.545	MGP_DBA2J_G0026763	Zfp64	69	31.561
MGP_DBA2J_G0030651	Prdm5	83	38.014	MGP_DBA2J_G0020530	Zfp759	94	38.870
MGP_DBA2J_G0030651	Prdm5	67	46.667	MGP_DBA2J_G0031677	Zfp574	85	30.051
MGP_DBA2J_G0030651	Prdm5	77	44.643	MGP_DBA2J_G0030998	Zfp637	83	46.479
MGP_DBA2J_G0030651	Prdm5	95	43.220	MGP_DBA2J_G0023062	Zfp677	79	36.027
MGP_DBA2J_G0030651	Prdm5	96	39.683	MGP_DBA2J_G0023064	Zfp51	98	39.683
MGP_DBA2J_G0030651	Prdm5	70	48.315	MGP_DBA2J_G0023084	Zfp945	82	35.252
MGP_DBA2J_G0030651	Prdm5	73	44.286	MGP_DBA2J_G0031640	Zfp235	68	39.608
MGP_DBA2J_G0030651	Prdm5	93	38.222	MGP_DBA2J_G0031644	Zfp108	66	38.222
MGP_DBA2J_G0030651	Prdm5	78	34.752	MGP_DBA2J_G0033798	Zfp319	88	34.602
MGP_DBA2J_G0030651	Prdm5	84	36.545	MGP_DBA2J_G0018235	Zfp867	95	36.545
MGP_DBA2J_G0030651	Prdm5	79	38.095	MGP_DBA2J_G0032859	-	80	38.095
MGP_DBA2J_G0030651	Prdm5	74	37.838	MGP_DBA2J_G0032858	E430018J23Rik	71	37.838
MGP_DBA2J_G0030651	Prdm5	73	40.562	MGP_DBA2J_G0032855	Zfp768	53	43.571
MGP_DBA2J_G0030651	Prdm5	91	39.062	MGP_DBA2J_G0021844	Zfp251	88	39.062