EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0030794 (Gene tree)
Gene ID: -
Gene Symbol: Tia1
Alias: 2310050N03Rik|AI256674|TIA-1|Tia|mTIA-1
Full Name: cytotoxic granule-associated RNA binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 30971 bases
Position: chr6:83621125-83652095
Accession: 107914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0078322	RRM_1	PF00076.22	4.5e-68	1	3
MGP_DBA2J_P0078322	RRM_1	PF00076.22	4.5e-68	2	3
MGP_DBA2J_P0078322	RRM_1	PF00076.22	4.5e-68	3	3
MGP_DBA2J_P0078316	RRM_1	PF00076.22	1.9e-67	1	3
MGP_DBA2J_P0078316	RRM_1	PF00076.22	1.9e-67	2	3
MGP_DBA2J_P0078316	RRM_1	PF00076.22	1.9e-67	3	3
MGP_DBA2J_P0078308	RRM_1	PF00076.22	2.1e-67	1	3
MGP_DBA2J_P0078308	RRM_1	PF00076.22	2.1e-67	2	3
MGP_DBA2J_P0078308	RRM_1	PF00076.22	2.1e-67	3	3
MGP_DBA2J_P0078309	RRM_1	PF00076.22	2.1e-67	1	3
MGP_DBA2J_P0078309	RRM_1	PF00076.22	2.1e-67	2	3
MGP_DBA2J_P0078309	RRM_1	PF00076.22	2.1e-67	3	3
MGP_DBA2J_P0078317	RRM_1	PF00076.22	2.3e-58	1	3
MGP_DBA2J_P0078317	RRM_1	PF00076.22	2.3e-58	2	3
MGP_DBA2J_P0078317	RRM_1	PF00076.22	2.3e-58	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0078325	-	1899	-	-	- (aa)	-	-
MGP_DBA2J_T0078324	-	823	-	-	- (aa)	-	-
MGP_DBA2J_T0078327	-	706	-	-	- (aa)	-	-
MGP_DBA2J_T0078326	-	2664	-	-	- (aa)	-	-
MGP_DBA2J_T0078321	-	1178	-	-	- (aa)	-	-
MGP_DBA2J_T0078320	-	4325	-	MGP_DBA2J_P0078320	212 (aa)	-	-
MGP_DBA2J_T0078309	-	4476	-	MGP_DBA2J_P0078309	386 (aa)	-	-
MGP_DBA2J_T0078308	-	1789	XM_006505889	MGP_DBA2J_P0078308	385 (aa)	XP_006505952	P52912
MGP_DBA2J_T0078329	-	758	-	-	- (aa)	-	-
MGP_DBA2J_T0078328	-	750	-	-	- (aa)	-	-
MGP_DBA2J_T0078323	-	864	-	-	- (aa)	-	-
MGP_DBA2J_T0078322	-	3107	-	MGP_DBA2J_P0078322	377 (aa)	-	-
MGP_DBA2J_T0078318	-	1290	-	MGP_DBA2J_P0078318	93 (aa)	-	-
MGP_DBA2J_T0078319	-	797	-	-	- (aa)	-	-
MGP_DBA2J_T0078334	-	585	-	-	- (aa)	-	-
MGP_DBA2J_T0078335	-	597	-	MGP_DBA2J_P0078335	105 (aa)	-	-
MGP_DBA2J_T0078332	-	2518	-	-	- (aa)	-	-
MGP_DBA2J_T0078333	-	716	-	-	- (aa)	-	-
MGP_DBA2J_T0078330	-	627	-	-	- (aa)	-	-
MGP_DBA2J_T0078331	-	877	-	-	- (aa)	-	-
MGP_DBA2J_T0078310	-	934	-	-	- (aa)	-	-
MGP_DBA2J_T0078311	-	422	-	-	- (aa)	-	-
MGP_DBA2J_T0078312	-	4420	-	-	- (aa)	-	-
MGP_DBA2J_T0078313	-	612	-	-	- (aa)	-	-
MGP_DBA2J_T0078314	-	1203	-	MGP_DBA2J_P0078314	133 (aa)	-	-
MGP_DBA2J_T0078315	-	3854	-	-	- (aa)	-	-
MGP_DBA2J_T0078316	-	3129	-	MGP_DBA2J_P0078316	375 (aa)	-	-
MGP_DBA2J_T0078317	-	1444	-	MGP_DBA2J_P0078317	285 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0030794's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0030794's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0030794	Tia1	73	35.366	MGP_DBA2J_G0016685	Rbm8a2	53	35.870
MGP_DBA2J_G0030794	Tia1	99	31.579	MGP_DBA2J_G0033155	Elavl1	95	32.298
MGP_DBA2J_G0030794	Tia1	95	33.333	MGP_DBA2J_G0028550	Pabpc4	100	33.333
MGP_DBA2J_G0030794	Tia1	85	30.000	MGP_DBA2J_G0024506	Rbm4	98	30.000
MGP_DBA2J_G0030794	Tia1	80	37.778	MGP_DBA2J_G0017327	Cirbp	91	35.714
MGP_DBA2J_G0030794	Tia1	98	31.169	MGP_DBA2J_G0034286	Elavl3	90	37.179
MGP_DBA2J_G0030794	Tia1	89	34.615	MGP_DBA2J_G0028258	Elavl2	96	34.615
MGP_DBA2J_G0030794	Tia1	70	41.333	MGP_DBA2J_G0035350	Rbm3	99	35.955
MGP_DBA2J_G0030794	Tia1	95	33.835	MGP_DBA2J_G0024202	Pabpc2	57	35.443
MGP_DBA2J_G0030794	Tia1	87	38.095	MGP_DBA2J_G0026666	Pabpc1l	59	38.095
MGP_DBA2J_G0030794	Tia1	86	37.931	MGP_DBA2J_G0027426	Sf3b4	65	30.000
MGP_DBA2J_G0030794	Tia1	69	32.308	MGP_DBA2J_G0029593	Hnrnpd	55	35.593
MGP_DBA2J_G0030794	Tia1	95	30.000	MGP_DBA2J_G0027016	Pabpc4l	95	30.539
MGP_DBA2J_G0030794	Tia1	93	38.667	MGP_DBA2J_G0027374	Celf3	77	37.805
MGP_DBA2J_G0030794	Tia1	80	34.043	MGP_DBA2J_G0035549	Rbmx	98	34.409
MGP_DBA2J_G0030794	Tia1	87	38.095	MGP_DBA2J_G0021631	Pabpc1	57	38.095
MGP_DBA2J_G0030794	Tia1	83	35.443	MGP_DBA2J_G0025176	Celf2	51	35.443
MGP_DBA2J_G0030794	Tia1	78	36.000	MGP_DBA2J_G0022560	Ncbp2	51	36.000
MGP_DBA2J_G0030794	Tia1	77	35.870	MGP_DBA2J_G0027446	Rbm8a	54	35.870
MGP_DBA2J_G0030794	Tia1	71	32.836	MGP_DBA2J_G0017401	Celf5	89	32.184
MGP_DBA2J_G0030794	Tia1	97	86.992	MGP_DBA2J_G0032905	Tial1	100	87.440
MGP_DBA2J_G0030794	Tia1	96	36.905	MGP_DBA2J_G0022975	Pabpc6	58	36.905
MGP_DBA2J_G0030794	Tia1	84	34.247	MGP_DBA2J_G0035849	Pabpc5	93	33.333
MGP_DBA2J_G0030794	Tia1	85	36.000	MGP_DBA2J_G0034715	Celf6	62	32.955
MGP_DBA2J_G0030794	Tia1	87	32.911	MGP_DBA2J_G0024042	Celf4	63	30.682
MGP_DBA2J_G0030794	Tia1	98	32.895	MGP_DBA2J_G0028389	Elavl4	94	35.897
MGP_DBA2J_G0030794	Tia1	60	31.285	MGP_DBA2J_G0028679	Trnau1ap	79	30.198