EuRBPDB

Description

Ensembl ID: MGP_DBA2J_G0033636 (Gene tree)
Gene ID: -
Gene Symbol: Smarca5
Alias: 4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 42573 bases
Position: chr8:77865545-77908117
Accession: 1935129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0089266	ResIII	PF04851.15	1e-10	1	1
MGP_DBA2J_P0089266	DEAD	PF00270.29	3.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0089266	-	6252	-	MGP_DBA2J_P0089266	1051 (aa)	-	Q91ZW3
MGP_DBA2J_T0089267	-	3181	-	-	- (aa)	-	-
MGP_DBA2J_T0089271	-	722	-	-	- (aa)	-	-
MGP_DBA2J_T0089270	-	701	-	-	- (aa)	-	-
MGP_DBA2J_T0089268	-	503	-	-	- (aa)	-	-
MGP_DBA2J_T0089269	-	334	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0033636	Smarca5	93	84.178	MGP_DBA2J_G0035485	Smarca1	93	84.178
MGP_DBA2J_G0033636	Smarca5	55	42.424	MGP_DBA2J_G0027463	Chd1l	64	42.568