EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0033656 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 11724 bases
Position: chr8:80893789-80905512
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0089324	ResIII	PF04851.15	3.1e-05	1	1
MGP_DBA2J_P0089327	ResIII	PF04851.15	3.1e-05	1	1
MGP_DBA2J_P0089328	ResIII	PF04851.15	3.1e-05	1	1
MGP_DBA2J_P0089324	DEAD	PF00270.29	4.1e-38	1	1
MGP_DBA2J_P0089327	DEAD	PF00270.29	4.1e-38	1	1
MGP_DBA2J_P0089328	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0089329	-	754	-	-	- (aa)	-	-
MGP_DBA2J_T0089328	-	1793	-	MGP_DBA2J_P0089328	427 (aa)	-	-
MGP_DBA2J_T0089325	-	1927	-	-	- (aa)	-	-
MGP_DBA2J_T0089324	-	1656	XM_006531332	MGP_DBA2J_P0089324	427 (aa)	XP_006531395	Q8VDW0
MGP_DBA2J_T0089327	-	3858	-	MGP_DBA2J_P0089327	427 (aa)	-	-
MGP_DBA2J_T0089326	-	1551	-	MGP_DBA2J_P0089326	208 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0033656's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0033656's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0033656	Ddx39	85	31.183	MGP_DBA2J_G0034348	Ddx25	81	31.328
MGP_DBA2J_G0033656	Ddx39	100	90.421	MGP_DBA2J_G0023466	Ddx39b	100	90.421
MGP_DBA2J_G0033656	Ddx39	90	32.316	MGP_DBA2J_G0033946	Ddx19b	80	31.298
MGP_DBA2J_G0033656	Ddx39	74	34.969	MGP_DBA2J_G0017857	Ddx56	61	32.051
MGP_DBA2J_G0033656	Ddx39	90	34.074	MGP_DBA2J_G0027537	Ddx20	50	34.140
MGP_DBA2J_G0033656	Ddx39	90	36.010	MGP_DBA2J_G0018381	Eif4a1	94	36.010
MGP_DBA2J_G0033656	Ddx39	81	30.312	MGP_DBA2J_G0016260	Ddx18	51	30.769
MGP_DBA2J_G0033656	Ddx39	86	37.197	MGP_DBA2J_G0019310	Eif4a3	89	37.197
MGP_DBA2J_G0033656	Ddx39	86	38.108	MGP_DBA2J_G0022512	Eif4a2	90	38.108
MGP_DBA2J_G0033656	Ddx39	90	30.392	MGP_DBA2J_G0035380	Ddx3x	56	31.565
MGP_DBA2J_G0033656	Ddx39	76	35.849	MGP_DBA2J_G0030711	Gm8994	80	35.149
MGP_DBA2J_G0033656	Ddx39	90	30.392	MGP_DBA2J_G0016762	D1Pas1	57	31.565
MGP_DBA2J_G0033656	Ddx39	87	33.156	MGP_DBA2J_G0033520	Ddx49	97	33.333
MGP_DBA2J_G0033656	Ddx39	89	32.620	MGP_DBA2J_G0031233	Ddx47	90	32.095