EuRBPDB

Description

Ensembl ID: MGP_DBA2J_G0034921 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 37494 bases
Position: chr9:85732526-85770019
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0093253	RRM_5	PF13893.6	2.5e-06	1	1
MGP_DBA2J_P0093256	RRM_5	PF13893.6	3.2e-06	1	1
MGP_DBA2J_P0093254	RRM_5	PF13893.6	4.8e-06	1	1
MGP_DBA2J_P0093251	RRM_5	PF13893.6	4.8e-06	1	1
MGP_DBA2J_P0093257	RRM_5	PF13893.6	6.2e-06	1	1
MGP_DBA2J_P0093254	RRM_1	PF00076.22	3e-44	1	3
MGP_DBA2J_P0093254	RRM_1	PF00076.22	3e-44	2	3
MGP_DBA2J_P0093254	RRM_1	PF00076.22	3e-44	3	3
MGP_DBA2J_P0093251	RRM_1	PF00076.22	3e-44	1	3
MGP_DBA2J_P0093251	RRM_1	PF00076.22	3e-44	2	3
MGP_DBA2J_P0093251	RRM_1	PF00076.22	3e-44	3	3
MGP_DBA2J_P0093257	RRM_1	PF00076.22	4.6e-44	1	3
MGP_DBA2J_P0093257	RRM_1	PF00076.22	4.6e-44	2	3
MGP_DBA2J_P0093257	RRM_1	PF00076.22	4.6e-44	3	3
MGP_DBA2J_P0093253	RRM_1	PF00076.22	8.4e-43	1	3
MGP_DBA2J_P0093253	RRM_1	PF00076.22	8.4e-43	2	3
MGP_DBA2J_P0093253	RRM_1	PF00076.22	8.4e-43	3	3
MGP_DBA2J_P0093256	RRM_1	PF00076.22	1.3e-42	1	3
MGP_DBA2J_P0093256	RRM_1	PF00076.22	1.3e-42	2	3
MGP_DBA2J_P0093256	RRM_1	PF00076.22	1.3e-42	3	3
MGP_DBA2J_P0093252	RRM_1	PF00076.22	1.4e-31	1	2
MGP_DBA2J_P0093252	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0093258	-	549	-	-	- (aa)	-	-
MGP_DBA2J_T0093259	-	766	-	MGP_DBA2J_P0093259	196 (aa)	-	-
MGP_DBA2J_T0093256	-	1767	-	MGP_DBA2J_P0093256	588 (aa)	-	-
MGP_DBA2J_T0093257	-	1921	-	MGP_DBA2J_P0093257	623 (aa)	-	-
MGP_DBA2J_T0093254	-	3404	-	MGP_DBA2J_P0093254	561 (aa)	-	-
MGP_DBA2J_T0093255	-	1925	-	MGP_DBA2J_P0093255	67 (aa)	-	-
MGP_DBA2J_T0093252	-	3175	-	MGP_DBA2J_P0093252	448 (aa)	-	-
MGP_DBA2J_T0093253	-	3286	-	MGP_DBA2J_P0093253	527 (aa)	-	-
MGP_DBA2J_T0093251	-	9449	XM_006511293	MGP_DBA2J_P0093251	562 (aa)	XP_006511356	Q7TMK9
MGP_DBA2J_T0093261	-	473	-	MGP_DBA2J_P0093261	94 (aa)	-	-
MGP_DBA2J_T0093260	-	2385	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0034921	Syncrip	53	54.333	MGP_DBA2J_G0027157	Rbm46	63	55.000
MGP_DBA2J_G0034921	Syncrip	99	79.841	MGP_DBA2J_G0028776	Hnrnpr	100	82.486
MGP_DBA2J_G0034921	Syncrip	58	52.308	MGP_DBA2J_G0024879	A1cf	52	53.398
MGP_DBA2J_G0034921	Syncrip	75	57.522	MGP_DBA2J_G0029402	Rbm47	88	58.451