EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0034954 (Gene tree)
Gene ID: -
Gene Symbol: Xrn1
Alias: Dhm2|exo|mXrn1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 106240 bases
Position: chr9:93262448-93368687
Accession: 891964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0093400	XRN_N	PF03159.18	3e-96	1	1
MGP_DBA2J_P0093396	XRN_N	PF03159.18	1.6e-95	1	1
MGP_DBA2J_P0093395	XRN_N	PF03159.18	1.6e-95	1	1
MGP_DBA2J_P0093397	XRN_N	PF03159.18	9.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0093397	-	357	-	MGP_DBA2J_P0093397	40 (aa)	-	-
MGP_DBA2J_T0093396	-	10256	-	MGP_DBA2J_P0093396	1719 (aa)	-	-
MGP_DBA2J_T0093395	-	5499	XM_006511153	MGP_DBA2J_P0093395	1723 (aa)	XP_006511216	A0A087WNV6
MGP_DBA2J_T0093399	-	6235	-	-	- (aa)	-	-
MGP_DBA2J_T0093398	-	3357	-	-	- (aa)	-	-
MGP_DBA2J_T0093403	-	3046	-	-	- (aa)	-	-
MGP_DBA2J_T0093402	-	844	-	-	- (aa)	-	-
MGP_DBA2J_T0093401	-	3615	-	-	- (aa)	-	-
MGP_DBA2J_T0093400	-	3093	-	MGP_DBA2J_P0093400	969 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0034954's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0034954's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0034954	Xrn1	90	66.667	MGP_DBA2J_G0026434	Xrn2	71	39.060