EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0035044 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp4
Alias: 1200003L19Rik|AlphaCP-4
Full Name: poly(rC) binding protein 4
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 11273 bases
Position: chr9:103811770-103823042
Accession: 1890471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0093849	KH_1	PF00013.29	3.4e-50	1	3
MGP_DBA2J_P0093849	KH_1	PF00013.29	3.4e-50	2	3
MGP_DBA2J_P0093849	KH_1	PF00013.29	3.4e-50	3	3
MGP_DBA2J_P0093851	KH_1	PF00013.29	2.7e-32	1	2
MGP_DBA2J_P0093851	KH_1	PF00013.29	2.7e-32	2	2
MGP_DBA2J_P0093858	KH_1	PF00013.29	1.5e-21	1	1
MGP_DBA2J_P0093846	KH_1	PF00013.29	1.3e-18	1	1
MGP_DBA2J_P0093853	KH_1	PF00013.29	2.3e-15	1	1
MGP_DBA2J_P0093855	KH_1	PF00013.29	1.2e-13	1	1
MGP_DBA2J_P0093860	KH_1	PF00013.29	5.3e-09	1	1
MGP_DBA2J_P0093851	KH_2	PF07650.17	8.3e-12	1	1
MGP_DBA2J_P0093846	KH_2	PF07650.17	2.3e-06	1	1
MGP_DBA2J_P0093853	KH_2	PF07650.17	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0093850	-	378	-	-	- (aa)	-	-
MGP_DBA2J_T0093851	-	893	-	MGP_DBA2J_P0093851	197 (aa)	-	-
MGP_DBA2J_T0093861	-	450	-	-	- (aa)	-	-
MGP_DBA2J_T0093860	-	924	-	MGP_DBA2J_P0093860	215 (aa)	-	-
MGP_DBA2J_T0093847	-	387	-	-	- (aa)	-	-
MGP_DBA2J_T0093846	-	651	XM_006511779	MGP_DBA2J_P0093846	119 (aa)	XP_006511842	A0A087WP16
MGP_DBA2J_T0093852	-	477	-	-	- (aa)	-	-
MGP_DBA2J_T0093853	-	752	-	MGP_DBA2J_P0093853	113 (aa)	-	-
MGP_DBA2J_T0093854	-	253	-	-	- (aa)	-	-
MGP_DBA2J_T0093855	-	232	-	MGP_DBA2J_P0093855	77 (aa)	-	-
MGP_DBA2J_T0093856	-	846	-	MGP_DBA2J_P0093856	150 (aa)	-	-
MGP_DBA2J_T0093857	-	289	-	-	- (aa)	-	-
MGP_DBA2J_T0093858	-	770	-	MGP_DBA2J_P0093858	168 (aa)	-	-
MGP_DBA2J_T0093859	-	314	-	-	- (aa)	-	-
MGP_DBA2J_T0093849	-	1987	-	MGP_DBA2J_P0093849	403 (aa)	-	-
MGP_DBA2J_T0093848	-	610	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0035044's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0035044's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0035044	Pcbp4	85	31.731	MGP_DBA2J_G0022501	Igf2bp2	62	31.111
MGP_DBA2J_G0035044	Pcbp4	97	67.826	MGP_DBA2J_G0030797	Pcbp1	98	53.541
MGP_DBA2J_G0035044	Pcbp4	76	33.684	MGP_DBA2J_G0027804	Fubp1	72	34.524
MGP_DBA2J_G0035044	Pcbp4	76	32.323	MGP_DBA2J_G0023776	Khsrp	54	34.091
MGP_DBA2J_G0035044	Pcbp4	98	66.321	MGP_DBA2J_G0022248	Pcbp2	97	59.877
MGP_DBA2J_G0035044	Pcbp4	76	41.538	MGP_DBA2J_G0031569	Nova2	54	41.538
MGP_DBA2J_G0035044	Pcbp4	76	41.538	MGP_DBA2J_G0031568	-	50	41.538
MGP_DBA2J_G0035044	Pcbp4	84	32.039	MGP_DBA2J_G0018827	Igf2bp1	59	30.597
MGP_DBA2J_G0035044	Pcbp4	86	33.728	MGP_DBA2J_G0020465	Hnrnpk	78	32.414
MGP_DBA2J_G0035044	Pcbp4	83	36.000	MGP_DBA2J_G0025431	Fubp3	70	36.000
MGP_DBA2J_G0035044	Pcbp4	93	70.652	MGP_DBA2J_G0017228	Pcbp3	85	69.811
MGP_DBA2J_G0035044	Pcbp4	86	31.551	MGP_DBA2J_G0032276	-	77	31.551
MGP_DBA2J_G0035044	Pcbp4	51	37.363	MGP_DBA2J_G0019545	Nova1	52	37.363