EuRBPDB

Description

Ensembl ID: MGP_DBA2J_G0035485 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 83162 bases
Position: chrX:42659092-42742253
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0095697	ResIII	PF04851.15	4.3e-12	1	1
MGP_DBA2J_P0095696	ResIII	PF04851.15	1.1e-11	1	1
MGP_DBA2J_P0095694	ResIII	PF04851.15	1.8e-11	1	1
MGP_DBA2J_P0095693	ResIII	PF04851.15	1.8e-11	1	1
MGP_DBA2J_P0095695	ResIII	PF04851.15	1.8e-11	1	1
MGP_DBA2J_P0095693	DEAD	PF00270.29	1.2e-06	1	1
MGP_DBA2J_P0095695	DEAD	PF00270.29	1.2e-06	1	1
MGP_DBA2J_P0095694	DEAD	PF00270.29	1.3e-06	1	1
MGP_DBA2J_P0095697	DEAD	PF00270.29	2.4e-06	1	1
MGP_DBA2J_P0095696	DEAD	PF00270.29	3.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0095694	-	3991	-	MGP_DBA2J_P0095694	1062 (aa)	-	-
MGP_DBA2J_T0095695	-	4798	-	MGP_DBA2J_P0095695	1046 (aa)	-	-
MGP_DBA2J_T0095696	-	2304	-	MGP_DBA2J_P0095696	768 (aa)	-	-
MGP_DBA2J_T0095697	-	1965	-	MGP_DBA2J_P0095697	381 (aa)	-	-
MGP_DBA2J_T0095693	-	4024	XM_006541563	MGP_DBA2J_P0095693	1046 (aa)	XP_006541626	Q6PGB8
MGP_DBA2J_T0095698	-	360	-	MGP_DBA2J_P0095698	117 (aa)	-	-
MGP_DBA2J_T0095699	-	409	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0035485	Smarca1	72	45.247	MGP_DBA2J_G0024938	Hells	65	47.410
MGP_DBA2J_G0035485	Smarca1	93	84.178	MGP_DBA2J_G0033636	Smarca5	93	84.178
MGP_DBA2J_G0035485	Smarca1	68	31.661	MGP_DBA2J_G0027869	Rad54b	62	32.212
MGP_DBA2J_G0035485	Smarca1	75	42.044	MGP_DBA2J_G0027463	Chd1l	62	43.419
MGP_DBA2J_G0035485	Smarca1	71	30.490	MGP_DBA2J_G0020503	Ercc6l2	82	30.353
MGP_DBA2J_G0035485	Smarca1	61	32.031	MGP_DBA2J_G0028429	Rad54l	66	33.267