EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0035849 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Plus strand
Length: 2936 bases
Position: chrX:115754877-115757812
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0096996	RRM_5	PF13893.6	7.2e-12	1	2
MGP_DBA2J_P0096996	RRM_5	PF13893.6	7.2e-12	2	2
MGP_DBA2J_P0096997	RRM_5	PF13893.6	7.2e-12	1	2
MGP_DBA2J_P0096997	RRM_5	PF13893.6	7.2e-12	2	2
MGP_DBA2J_P0096996	RRM_1	PF00076.22	1.1e-77	1	4
MGP_DBA2J_P0096996	RRM_1	PF00076.22	1.1e-77	2	4
MGP_DBA2J_P0096996	RRM_1	PF00076.22	1.1e-77	3	4
MGP_DBA2J_P0096996	RRM_1	PF00076.22	1.1e-77	4	4
MGP_DBA2J_P0096997	RRM_1	PF00076.22	1.1e-77	1	4
MGP_DBA2J_P0096997	RRM_1	PF00076.22	1.1e-77	2	4
MGP_DBA2J_P0096997	RRM_1	PF00076.22	1.1e-77	3	4
MGP_DBA2J_P0096997	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0096996	-	2390	-	MGP_DBA2J_P0096996	381 (aa)	-	Q8C7D3
MGP_DBA2J_T0096997	-	2199	-	MGP_DBA2J_P0096997	381 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0035849's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0035849's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0035849	Pabpc5	94	37.037	MGP_DBA2J_G0028258	Elavl2	89	37.037
MGP_DBA2J_G0035849	Pabpc5	96	57.967	MGP_DBA2J_G0027016	Pabpc4l	97	57.865
MGP_DBA2J_G0035849	Pabpc5	95	58.445	MGP_DBA2J_G0022975	Pabpc6	59	58.470
MGP_DBA2J_G0035849	Pabpc5	96	56.944	MGP_DBA2J_G0026666	Pabpc1l	64	57.022
MGP_DBA2J_G0035849	Pabpc5	96	61.111	MGP_DBA2J_G0024202	Pabpc2	62	60.955
MGP_DBA2J_G0035849	Pabpc5	95	65.289	MGP_DBA2J_G0028550	Pabpc4	100	70.874
MGP_DBA2J_G0035849	Pabpc5	93	33.333	MGP_DBA2J_G0030794	Tia1	84	34.247
MGP_DBA2J_G0035849	Pabpc5	63	34.483	MGP_DBA2J_G0034715	Celf6	51	34.483
MGP_DBA2J_G0035849	Pabpc5	95	64.463	MGP_DBA2J_G0021631	Pabpc1	58	64.607
MGP_DBA2J_G0035849	Pabpc5	94	41.104	MGP_DBA2J_G0027426	Sf3b4	67	40.881