EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0017220 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp3
Alias: AlphaCP-3
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 196561 bases
Position: chr10:72819219-73015779
Accession: 1890470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0025651	KH_1	PF00013.29	2.9e-55	1	3
MGP_FVBNJ_P0025651	KH_1	PF00013.29	2.9e-55	2	3
MGP_FVBNJ_P0025651	KH_1	PF00013.29	2.9e-55	3	3
MGP_FVBNJ_P0025648	KH_1	PF00013.29	3e-55	1	3
MGP_FVBNJ_P0025648	KH_1	PF00013.29	3e-55	2	3
MGP_FVBNJ_P0025648	KH_1	PF00013.29	3e-55	3	3
MGP_FVBNJ_P0025650	KH_1	PF00013.29	3e-55	1	3
MGP_FVBNJ_P0025650	KH_1	PF00013.29	3e-55	2	3
MGP_FVBNJ_P0025650	KH_1	PF00013.29	3e-55	3	3
MGP_FVBNJ_P0025653	KH_1	PF00013.29	7.7e-19	1	1
MGP_FVBNJ_P0025651	KH_2	PF07650.17	3.9e-15	1	1
MGP_FVBNJ_P0025648	KH_2	PF07650.17	3.9e-15	1	1
MGP_FVBNJ_P0025650	KH_2	PF07650.17	3.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0025647	-	2513	XM_006513916	MGP_FVBNJ_P0025647	394 (aa)	XP_006513979	P57722
MGP_FVBNJ_T0025650	-	1748	-	MGP_FVBNJ_P0025650	371 (aa)	-	-
MGP_FVBNJ_T0025652	-	1095	-	-	- (aa)	-	-
MGP_FVBNJ_T0025653	-	605	-	MGP_FVBNJ_P0025653	160 (aa)	-	-
MGP_FVBNJ_T0025654	-	944	-	MGP_FVBNJ_P0025654	226 (aa)	-	-
MGP_FVBNJ_T0025655	-	717	-	-	- (aa)	-	-
MGP_FVBNJ_T0025656	-	337	-	-	- (aa)	-	-
MGP_FVBNJ_T0025651	-	2544	-	MGP_FVBNJ_P0025651	370 (aa)	-	-
MGP_FVBNJ_T0025649	-	1736	-	-	- (aa)	-	-
MGP_FVBNJ_T0025648	-	2013	-	MGP_FVBNJ_P0025648	371 (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0017220's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0017220's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0017220	Pcbp3	89	36.765	MGP_FVBNJ_G0022476	Igf2bp2	62	33.333
MGP_FVBNJ_G0017220	Pcbp3	99	65.873	MGP_FVBNJ_G0030750	Pcbp1	99	68.033
MGP_FVBNJ_G0017220	Pcbp3	66	33.582	MGP_FVBNJ_G0018816	Igf2bp1	60	33.333
MGP_FVBNJ_G0017220	Pcbp3	99	82.143	MGP_FVBNJ_G0022224	Pcbp2	99	78.338
MGP_FVBNJ_G0017220	Pcbp3	72	40.351	MGP_FVBNJ_G0019534	Nova1	59	40.351
MGP_FVBNJ_G0017220	Pcbp3	79	41.667	MGP_FVBNJ_G0020444	Hnrnpk	70	51.316
MGP_FVBNJ_G0017220	Pcbp3	85	31.973	MGP_FVBNJ_G0025394	Fubp3	77	31.973
MGP_FVBNJ_G0017220	Pcbp3	85	69.811	MGP_FVBNJ_G0034992	Pcbp4	93	70.652
MGP_FVBNJ_G0017220	Pcbp3	86	35.000	MGP_FVBNJ_G0030491	Igf2bp3	59	33.813
MGP_FVBNJ_G0017220	Pcbp3	66	31.250	MGP_FVBNJ_G0027771	Fubp1	72	33.019