EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0017321 (Gene tree)
Gene ID: -
Gene Symbol: Cirbp
Alias: Cirp|R74941
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 7612 bases
Position: chr10:76332029-76339640
Accession: 893588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0026002	RRM_1	PF00076.22	5e-26	1	1
MGP_FVBNJ_P0026004	RRM_1	PF00076.22	1.2e-25	1	1
MGP_FVBNJ_P0026003	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0026008	-	593	-	-	- (aa)	-	-
MGP_FVBNJ_T0026002	-	423	XM_006513164	MGP_FVBNJ_P0026002	108 (aa)	XP_006513227	P60824
MGP_FVBNJ_T0026003	-	1321	-	MGP_FVBNJ_P0026003	172 (aa)	-	-
MGP_FVBNJ_T0026004	-	937	-	MGP_FVBNJ_P0026004	168 (aa)	-	-
MGP_FVBNJ_T0026005	-	376	-	-	- (aa)	-	-
MGP_FVBNJ_T0026006	-	912	-	-	- (aa)	-	-
MGP_FVBNJ_T0026007	-	894	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0017321's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0017321's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0017321	Cirbp	84	31.868	MGP_FVBNJ_G0026611	Srsf6	61	31.868
MGP_FVBNJ_G0017321	Cirbp	70	44.737	MGP_FVBNJ_G0030504	Hnrnpa2b1	50	44.737
MGP_FVBNJ_G0017321	Cirbp	78	40.476	MGP_FVBNJ_G0026751	Rbm38	74	38.043
MGP_FVBNJ_G0017321	Cirbp	87	40.351	MGP_FVBNJ_G0029738	Msi1	51	38.983
MGP_FVBNJ_G0017321	Cirbp	91	39.759	MGP_FVBNJ_G0026632	Pabpc1l	53	39.759
MGP_FVBNJ_G0017321	Cirbp	88	43.243	MGP_FVBNJ_G0018747	Msi2	61	41.429
MGP_FVBNJ_G0017321	Cirbp	56	45.000	MGP_FVBNJ_G0015880	Boll	56	45.833
MGP_FVBNJ_G0017321	Cirbp	76	37.500	MGP_FVBNJ_G0028225	Elavl2	64	37.500
MGP_FVBNJ_G0017321	Cirbp	85	38.043	MGP_FVBNJ_G0022535	Ncbp2	54	36.471
MGP_FVBNJ_G0017321	Cirbp	79	63.529	MGP_FVBNJ_G0035499	Rbmx	83	63.529
MGP_FVBNJ_G0017321	Cirbp	79	37.500	MGP_FVBNJ_G0034229	Elavl3	62	37.500
MGP_FVBNJ_G0017321	Cirbp	85	40.244	MGP_FVBNJ_G0032858	Tial1	67	40.244
MGP_FVBNJ_G0017321	Cirbp	91	35.714	MGP_FVBNJ_G0030747	Tia1	80	37.778
MGP_FVBNJ_G0017321	Cirbp	99	60.588	MGP_FVBNJ_G0035297	Rbm3	100	63.529
MGP_FVBNJ_G0017321	Cirbp	82	33.333	MGP_FVBNJ_G0033102	Elavl1	75	33.333
MGP_FVBNJ_G0017321	Cirbp	83	38.776	MGP_FVBNJ_G0029552	Hnrnpd	84	36.559
MGP_FVBNJ_G0017321	Cirbp	97	38.095	MGP_FVBNJ_G0020438	Hnrnpa0	79	40.698
MGP_FVBNJ_G0017321	Cirbp	80	32.558	MGP_FVBNJ_G0025138	Celf2	82	33.333
MGP_FVBNJ_G0017321	Cirbp	80	41.860	MGP_FVBNJ_G0025662	Hnrnpa3	57	44.737
MGP_FVBNJ_G0017321	Cirbp	68	34.247	MGP_FVBNJ_G0021210	Pspc1	69	41.304
MGP_FVBNJ_G0017321	Cirbp	84	38.889	MGP_FVBNJ_G0028357	Elavl4	70	38.889
MGP_FVBNJ_G0017321	Cirbp	92	42.105	MGP_FVBNJ_G0017327	Dazap1	74	47.273
MGP_FVBNJ_G0017321	Cirbp	73	36.709	MGP_FVBNJ_G0029554	Hnrnpdl	54	36.709