EuRBPDB

Description

Ensembl ID: MGP_FVBNJ_G0018076 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnph1
Alias: AI642080|E430005G16Rik|Hnrnph|Hnrph|Hnrph1|Hnrph1 {ECO:0000313|EMBL:AAH42187.2,GN ECO:0000313|MGI:MGI:1891925}
Full Name: heterogeneous nuclear ribonucleoprotein H1
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 10989 bases
Position: chr11:47080462-47091450
Accession: 1891925
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0028643	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_FVBNJ_P0028644	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_FVBNJ_P0028649	zf-RNPHF	PF08080.12	1.5e-22	1	1
MGP_FVBNJ_P0028643	RRM_1	PF00076.22	2e-32	1	3
MGP_FVBNJ_P0028643	RRM_1	PF00076.22	2e-32	2	3
MGP_FVBNJ_P0028643	RRM_1	PF00076.22	2e-32	3	3
MGP_FVBNJ_P0028644	RRM_1	PF00076.22	2e-32	1	3
MGP_FVBNJ_P0028644	RRM_1	PF00076.22	2e-32	2	3
MGP_FVBNJ_P0028644	RRM_1	PF00076.22	2e-32	3	3
MGP_FVBNJ_P0028649	RRM_1	PF00076.22	2.5e-32	1	3
MGP_FVBNJ_P0028649	RRM_1	PF00076.22	2.5e-32	2	3
MGP_FVBNJ_P0028649	RRM_1	PF00076.22	2.5e-32	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0028651	-	860	-	-	- (aa)	-	-
MGP_FVBNJ_T0028650	-	1116	-	-	- (aa)	-	-
MGP_FVBNJ_T0028660	-	677	-	-	- (aa)	-	-
MGP_FVBNJ_T0028657	-	163	-	-	- (aa)	-	-
MGP_FVBNJ_T0028656	-	914	-	-	- (aa)	-	-
MGP_FVBNJ_T0028655	-	582	-	-	- (aa)	-	-
MGP_FVBNJ_T0028643	-	2426	XM_006533875	MGP_FVBNJ_P0028643	449 (aa)	XP_006533938	O35737
MGP_FVBNJ_T0028644	-	2224	-	MGP_FVBNJ_P0028644	449 (aa)	-	-
MGP_FVBNJ_T0028645	-	4571	-	-	- (aa)	-	-
MGP_FVBNJ_T0028646	-	581	-	-	- (aa)	-	-
MGP_FVBNJ_T0028647	-	4002	-	-	- (aa)	-	-
MGP_FVBNJ_T0028648	-	870	-	-	- (aa)	-	-
MGP_FVBNJ_T0028649	-	2120	-	MGP_FVBNJ_P0028649	472 (aa)	-	-
MGP_FVBNJ_T0028653	-	1724	-	-	- (aa)	-	-
MGP_FVBNJ_T0028658	-	159	-	-	- (aa)	-	-
MGP_FVBNJ_T0028654	-	832	-	-	- (aa)	-	-
MGP_FVBNJ_T0028659	-	810	-	-	- (aa)	-	-
MGP_FVBNJ_T0028652	-	582	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0018076	Hnrnph1	100	87.603	MGP_FVBNJ_G0035822	Hnrnph2	100	87.603
MGP_FVBNJ_G0018076	Hnrnph1	90	60.923	MGP_FVBNJ_G0017142	Hnrnph3	99	59.673
MGP_FVBNJ_G0018076	Hnrnph1	61	84.348	MGP_FVBNJ_G0019390	-	91	84.348
MGP_FVBNJ_G0018076	Hnrnph1	60	64.474	MGP_FVBNJ_G0029483	Grsf1	92	65.333