EuRBPDB

Description

Ensembl ID: MGP_FVBNJ_G0018097 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpab
Alias: 3010025C11Rik|CBF-A|Cbf-a|Cgbfa|Hnrpab|Hnrpab {ECO:0000313|EMBL:EDL33661.1,GN ECO:0000313|MGI:MGI:1330294}|Hnrpab {ECO:0000313|EMBL:EDL33663.1,GN ECO:0000313|MGI:MGI:1330294}
Full Name: heterogeneous nuclear ribonucleoprotein A/B
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 6740 bases
Position: chr11:48349143-48355882
Accession: 1330294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0028726	CBFNT	PF08143.11	3.2e-19	1	1
MGP_FVBNJ_P0028727	CBFNT	PF08143.11	3.7e-19	1	1
MGP_FVBNJ_P0028728	CBFNT	PF08143.11	4.2e-19	1	1
MGP_FVBNJ_P0028726	RRM_1	PF00076.22	6.3e-34	1	2
MGP_FVBNJ_P0028726	RRM_1	PF00076.22	6.3e-34	2	2
MGP_FVBNJ_P0028727	RRM_1	PF00076.22	8.4e-34	1	2
MGP_FVBNJ_P0028727	RRM_1	PF00076.22	8.4e-34	2	2
MGP_FVBNJ_P0028728	RRM_1	PF00076.22	1e-33	1	2
MGP_FVBNJ_P0028728	RRM_1	PF00076.22	1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0028727	-	2013	-	MGP_FVBNJ_P0028727	311 (aa)	-	-
MGP_FVBNJ_T0028726	-	2370	-	MGP_FVBNJ_P0028726	285 (aa)	-	Q99020
MGP_FVBNJ_T0028728	-	1437	-	MGP_FVBNJ_P0028728	332 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0018097	Hnrnpab	65	31.414	MGP_FVBNJ_G0034657	Celf6	66	32.500
MGP_FVBNJ_G0018097	Hnrnpab	70	48.039	MGP_FVBNJ_G0018747	Msi2	100	52.212
MGP_FVBNJ_G0018097	Hnrnpab	53	33.333	MGP_FVBNJ_G0033102	Elavl1	50	33.333
MGP_FVBNJ_G0018097	Hnrnpab	51	33.846	MGP_FVBNJ_G0019803	Slirp	73	33.846
MGP_FVBNJ_G0018097	Hnrnpab	67	40.351	MGP_FVBNJ_G0017327	Dazap1	99	40.588
MGP_FVBNJ_G0018097	Hnrnpab	64	37.368	MGP_FVBNJ_G0030504	Hnrnpa2b1	61	38.068
MGP_FVBNJ_G0018097	Hnrnpab	82	32.099	MGP_FVBNJ_G0028906	Tardbp	86	33.146
MGP_FVBNJ_G0018097	Hnrnpab	79	72.052	MGP_FVBNJ_G0029552	Hnrnpd	100	88.000
MGP_FVBNJ_G0018097	Hnrnpab	57	35.882	MGP_FVBNJ_G0020438	Hnrnpa0	67	35.882
MGP_FVBNJ_G0018097	Hnrnpab	82	58.419	MGP_FVBNJ_G0029554	Hnrnpdl	89	57.292
MGP_FVBNJ_G0018097	Hnrnpab	79	40.800	MGP_FVBNJ_G0029738	Msi1	58	48.052