EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0018989 (Gene tree)
Gene ID: -
Gene Symbol: Rab5c
Alias: AI326010|Rab5C|Rabl
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 23205 bases
Position: chr11:98240953-98264157
Accession: 105306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0032187	MMR_HSR1	PF01926.23	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0032188	-	1967	-	MGP_FVBNJ_P0032188	234 (aa)	-	-
MGP_FVBNJ_T0032189	-	412	-	MGP_FVBNJ_P0032189	83 (aa)	-	-
MGP_FVBNJ_T0032190	-	441	-	MGP_FVBNJ_P0032190	34 (aa)	-	-
MGP_FVBNJ_T0032187	-	1915	XM_006532586	MGP_FVBNJ_P0032187	216 (aa)	XP_006532649	P35278

Gene Model

Click here to download MGP_FVBNJ_G0018989's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0018989's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0018989	Rab5c	73	31.875	MGP_FVBNJ_G0018590	Rab34	62	31.875
MGP_FVBNJ_G0018989	Rab5c	89	40.206	MGP_FVBNJ_G0021106	Rab2b	90	40.206
MGP_FVBNJ_G0018989	Rab5c	94	41.379	MGP_FVBNJ_G0034954	Rab6b	98	41.379
MGP_FVBNJ_G0018989	Rab5c	78	32.544	MGP_FVBNJ_G0031251	Kras	98	30.102
MGP_FVBNJ_G0018989	Rab5c	78	32.544	MGP_FVBNJ_G0031358	Rasl2-9	77	32.544
MGP_FVBNJ_G0018989	Rab5c	86	39.785	MGP_FVBNJ_G0025457	Rab14	89	40.741
MGP_FVBNJ_G0018989	Rab5c	89	41.089	MGP_FVBNJ_G0027195	Rab25	93	41.089
MGP_FVBNJ_G0018989	Rab5c	89	35.784	MGP_FVBNJ_G0019682	Rab15	95	35.784
MGP_FVBNJ_G0018989	Rab5c	75	36.585	MGP_FVBNJ_G0035613	Rab39b	77	36.585
MGP_FVBNJ_G0018989	Rab5c	89	44.330	MGP_FVBNJ_G0024493	Rab1b	96	44.330
MGP_FVBNJ_G0018989	Rab5c	81	44.000	MGP_FVBNJ_G0032349	Rab6a	84	44.000
MGP_FVBNJ_G0018989	Rab5c	97	86.124	MGP_FVBNJ_G0017710	Rab5b	97	86.124
MGP_FVBNJ_G0018989	Rab5c	86	38.806	MGP_FVBNJ_G0023781	Rab12	75	36.000
MGP_FVBNJ_G0018989	Rab5c	89	35.859	MGP_FVBNJ_G0035852	Rab9b	97	35.859
MGP_FVBNJ_G0018989	Rab5c	90	41.262	MGP_FVBNJ_G0034698	Rab11a	88	49.630
MGP_FVBNJ_G0018989	Rab5c	100	87.500	MGP_FVBNJ_G0023683	Rab5a	100	87.500
MGP_FVBNJ_G0018989	Rab5c	83	30.000	MGP_FVBNJ_G0027476	Nras	99	33.333
MGP_FVBNJ_G0018989	Rab5c	73	35.625	MGP_FVBNJ_G0017181	Rab36	60	35.625
MGP_FVBNJ_G0018989	Rab5c	89	43.590	MGP_FVBNJ_G0017895	Rab1a	95	43.590
MGP_FVBNJ_G0018989	Rab5c	71	35.948	MGP_FVBNJ_G0022049	Rabl2	67	35.948
MGP_FVBNJ_G0018989	Rab5c	93	37.379	MGP_FVBNJ_G0026992	Rab33b	89	37.379
MGP_FVBNJ_G0018989	Rab5c	55	31.967	MGP_FVBNJ_G0030875	Arl8b	62	31.967
MGP_FVBNJ_G0018989	Rab5c	78	42.012	MGP_FVBNJ_G0032289	Rab30	83	42.012
MGP_FVBNJ_G0018989	Rab5c	98	40.845	MGP_FVBNJ_G0019195	Rab37	95	40.845
MGP_FVBNJ_G0018989	Rab5c	55	31.707	MGP_FVBNJ_G0016364	Arl8a	62	31.707
MGP_FVBNJ_G0018989	Rab5c	75	48.447	MGP_FVBNJ_G0023335	Rab11b	89	49.624
MGP_FVBNJ_G0018989	Rab5c	90	38.974	MGP_FVBNJ_G0027821	Rab2a	92	38.974
MGP_FVBNJ_G0018989	Rab5c	75	45.062	MGP_FVBNJ_G0023927	Rab18	78	45.062
MGP_FVBNJ_G0018989	Rab5c	89	36.318	MGP_FVBNJ_G0035444	Rab33a	85	36.318
MGP_FVBNJ_G0018989	Rab5c	81	31.250	MGP_FVBNJ_G0029129	Rheb	93	31.250
MGP_FVBNJ_G0018989	Rab5c	90	47.423	MGP_FVBNJ_G0026758	Rab22a	98	47.423
MGP_FVBNJ_G0018989	Rab5c	91	46.939	MGP_FVBNJ_G0023772	Rab31	98	46.939
MGP_FVBNJ_G0018989	Rab5c	81	33.702	MGP_FVBNJ_G0032988	Hras	94	33.702
MGP_FVBNJ_G0018989	Rab5c	89	34.848	MGP_FVBNJ_G0036009	Rab9	97	34.848