EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0019803 (Gene tree)
Gene ID: -
Gene Symbol: Slirp
Alias: 1810035L17Rik
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 6038 bases
Position: chr12:83486990-83493027
Accession: 1916394
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0035319	RRM_1	PF00076.22	4.1e-14	1	1
MGP_FVBNJ_P0035318	RRM_1	PF00076.22	8.8e-14	1	1
MGP_FVBNJ_P0035320	RRM_1	PF00076.22	8.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0035320	-	335	-	MGP_FVBNJ_P0035320	102 (aa)	-	-
MGP_FVBNJ_T0035318	-	802	-	MGP_FVBNJ_P0035318	99 (aa)	-	Q9D8T7
MGP_FVBNJ_T0035319	-	339	-	MGP_FVBNJ_P0035319	112 (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0019803's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0019803's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0019803	Slirp	73	33.846	MGP_FVBNJ_G0018097	Hnrnpab	51	33.846
MGP_FVBNJ_G0019803	Slirp	70	33.333	MGP_FVBNJ_G0029552	Hnrnpd	71	33.333
MGP_FVBNJ_G0019803	Slirp	70	33.824	MGP_FVBNJ_G0018747	Msi2	60	33.824
MGP_FVBNJ_G0019803	Slirp	78	33.846	MGP_FVBNJ_G0017327	Dazap1	89	33.846