EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0021609 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 13747 bases
Position: chr15:32905818-32919564
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0040537	PABP	PF00658.18	8.7e-33	1	1
MGP_FVBNJ_P0040536	PABP	PF00658.18	7.7e-32	1	1
MGP_FVBNJ_P0040536	RRM_5	PF13893.6	4.2e-07	1	2
MGP_FVBNJ_P0040536	RRM_5	PF13893.6	4.2e-07	2	2
MGP_FVBNJ_P0040536	RRM_1	PF00076.22	1.7e-89	1	4
MGP_FVBNJ_P0040536	RRM_1	PF00076.22	1.7e-89	2	4
MGP_FVBNJ_P0040536	RRM_1	PF00076.22	1.7e-89	3	4
MGP_FVBNJ_P0040536	RRM_1	PF00076.22	1.7e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0040538	-	725	-	-	- (aa)	-	-
MGP_FVBNJ_T0040540	-	866	-	-	- (aa)	-	-
MGP_FVBNJ_T0040536	-	2676	XM_011245339	MGP_FVBNJ_P0040536	635 (aa)	XP_011243641	P29341
MGP_FVBNJ_T0040537	-	543	-	MGP_FVBNJ_P0040537	117 (aa)	-	-
MGP_FVBNJ_T0040541	-	2881	-	-	- (aa)	-	-
MGP_FVBNJ_T0040539	-	632	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0021609's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0021609's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0021609	Pabpc1	54	38.095	MGP_FVBNJ_G0030747	Tia1	87	38.095
MGP_FVBNJ_G0021609	Pabpc1	55	40.000	MGP_FVBNJ_G0029769	Rbm19	54	30.256
MGP_FVBNJ_G0021609	Pabpc1	97	70.854	MGP_FVBNJ_G0026836	-	98	70.854
MGP_FVBNJ_G0021609	Pabpc1	54	37.349	MGP_FVBNJ_G0028225	Elavl2	89	37.349
MGP_FVBNJ_G0021609	Pabpc1	79	93.548	MGP_FVBNJ_G0028517	Pabpc4	100	94.928
MGP_FVBNJ_G0021609	Pabpc1	54	65.205	MGP_FVBNJ_G0035793	Pabpc5	96	65.043
MGP_FVBNJ_G0021609	Pabpc1	56	35.556	MGP_FVBNJ_G0032858	Tial1	94	31.008
MGP_FVBNJ_G0021609	Pabpc1	100	76.101	MGP_FVBNJ_G0024168	Pabpc2	100	76.101
MGP_FVBNJ_G0021609	Pabpc1	54	40.278	MGP_FVBNJ_G0033102	Elavl1	95	40.278
MGP_FVBNJ_G0021609	Pabpc1	54	31.013	MGP_FVBNJ_G0020438	Hnrnpa0	59	31.013
MGP_FVBNJ_G0021609	Pabpc1	99	76.724	MGP_FVBNJ_G0022945	Pabpc6	99	76.471
MGP_FVBNJ_G0021609	Pabpc1	54	36.145	MGP_FVBNJ_G0034229	Elavl3	92	36.145
MGP_FVBNJ_G0021609	Pabpc1	54	36.145	MGP_FVBNJ_G0028357	Elavl4	88	36.145
MGP_FVBNJ_G0021609	Pabpc1	55	69.277	MGP_FVBNJ_G0026984	Pabpc4l	97	69.277
MGP_FVBNJ_G0021609	Pabpc1	98	58.110	MGP_FVBNJ_G0026632	Pabpc1l	99	57.953