EuRBPDB

Description

Ensembl ID: MGP_FVBNJ_G0023404 (Gene tree)
Gene ID: -
Gene Symbol: Lsm2
Alias: D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|Sm-X5GN|SmX5|snRNP
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 4027 bases
Position: chr17:33109619-33113645
Accession: 90676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0046946	LSM	PF01423.22	1.1e-16	1	1
MGP_FVBNJ_P0046949	LSM	PF01423.22	2.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0046954	-	528	-	-	- (aa)	-	-
MGP_FVBNJ_T0046955	-	1065	-	-	- (aa)	-	-
MGP_FVBNJ_T0046949	-	872	-	MGP_FVBNJ_P0046949	131 (aa)	-	-
MGP_FVBNJ_T0046948	-	368	-	-	- (aa)	-	-
MGP_FVBNJ_T0046950	-	686	-	-	- (aa)	-	-
MGP_FVBNJ_T0046951	-	652	-	-	- (aa)	-	-
MGP_FVBNJ_T0046952	-	869	-	MGP_FVBNJ_P0046952	85 (aa)	-	-
MGP_FVBNJ_T0046953	-	691	-	-	- (aa)	-	-
MGP_FVBNJ_T0046947	-	520	-	-	- (aa)	-	-
MGP_FVBNJ_T0046946	-	839	-	MGP_FVBNJ_P0046946	95 (aa)	-	-
MGP_FVBNJ_T0046945	-	1585	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0023404	Lsm2	92	34.831	MGP_FVBNJ_G0033480	Lsm4	70	35.644
MGP_FVBNJ_G0023404	Lsm2	77	31.507	MGP_FVBNJ_G0028548	Lsm10	75	31.507