EuRBPDB

Description

Ensembl ID: MGP_FVBNJ_G0023433 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 14094 bases
Position: chr17:33381281-33395374
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0047081	ResIII	PF04851.15	9e-08	1	1
MGP_FVBNJ_P0047080	ResIII	PF04851.15	2.3e-07	1	1
MGP_FVBNJ_P0047083	ResIII	PF04851.15	2.3e-07	1	1
MGP_FVBNJ_P0047085	ResIII	PF04851.15	2.3e-07	1	1
MGP_FVBNJ_P0047080	DEAD	PF00270.29	1.2e-38	1	1
MGP_FVBNJ_P0047083	DEAD	PF00270.29	1.2e-38	1	1
MGP_FVBNJ_P0047085	DEAD	PF00270.29	1.2e-38	1	1
MGP_FVBNJ_P0047081	DEAD	PF00270.29	4e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0047085	-	1766	-	MGP_FVBNJ_P0047085	428 (aa)	-	-
MGP_FVBNJ_T0047084	-	741	-	-	- (aa)	-	-
MGP_FVBNJ_T0047081	-	759	-	MGP_FVBNJ_P0047081	148 (aa)	-	-
MGP_FVBNJ_T0047080	-	1735	-	MGP_FVBNJ_P0047080	428 (aa)	-	Q9Z1N5
MGP_FVBNJ_T0047083	-	2846	-	MGP_FVBNJ_P0047083	428 (aa)	-	-
MGP_FVBNJ_T0047082	-	1710	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0023433	Ddx39b	100	90.888	MGP_FVBNJ_G0033602	Ddx39	100	90.888
MGP_FVBNJ_G0023433	Ddx39b	99	37.162	MGP_FVBNJ_G0033890	Ddx19b	82	33.083
MGP_FVBNJ_G0023433	Ddx39b	99	31.792	MGP_FVBNJ_G0035327	Ddx3x	56	30.105
MGP_FVBNJ_G0023433	Ddx39b	64	35.417	MGP_FVBNJ_G0030664	-	91	31.122
MGP_FVBNJ_G0023433	Ddx39b	99	33.742	MGP_FVBNJ_G0033889	Ddx19a	83	31.884
MGP_FVBNJ_G0023433	Ddx39b	99	40.816	MGP_FVBNJ_G0022488	Eif4a2	90	38.919
MGP_FVBNJ_G0023433	Ddx39b	99	36.667	MGP_FVBNJ_G0033461	Ddx49	97	33.046
MGP_FVBNJ_G0023433	Ddx39b	99	35.135	MGP_FVBNJ_G0034291	Ddx25	82	32.020
MGP_FVBNJ_G0023433	Ddx39b	99	31.792	MGP_FVBNJ_G0016758	D1Pas1	57	30.105
MGP_FVBNJ_G0023433	Ddx39b	77	30.029	MGP_FVBNJ_G0019136	Ddx5	66	30.029
MGP_FVBNJ_G0023433	Ddx39b	99	36.486	MGP_FVBNJ_G0031183	Ddx47	90	31.926
MGP_FVBNJ_G0023433	Ddx39b	99	37.415	MGP_FVBNJ_G0019302	Eif4a3	89	35.606
MGP_FVBNJ_G0023433	Ddx39b	99	36.424	MGP_FVBNJ_G0026705	Ddx27	54	31.655