EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0024168 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc2
Alias: Pabp|Pabp+|Pabp2
Full Name: poly(A) binding protein%2C cytoplasmic 2
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 2586 bases
Position: chr18:36289369-36291954
Accession: 1349723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0049234	PABP	PF00658.18	1.8e-21	1	1
MGP_FVBNJ_P0049234	RRM_5	PF13893.6	8.4e-10	1	2
MGP_FVBNJ_P0049234	RRM_5	PF13893.6	8.4e-10	2	2
MGP_FVBNJ_P0049234	RRM_1	PF00076.22	2.1e-86	1	4
MGP_FVBNJ_P0049234	RRM_1	PF00076.22	2.1e-86	2	4
MGP_FVBNJ_P0049234	RRM_1	PF00076.22	2.1e-86	3	4
MGP_FVBNJ_P0049234	RRM_1	PF00076.22	2.1e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0049234	-	2586	-	MGP_FVBNJ_P0049234	628 (aa)	-	Q62029

Gene Model

Click here to download MGP_FVBNJ_G0024168's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0024168's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0024168	Pabpc2	58	37.500	MGP_FVBNJ_G0027397	Sf3b4	67	37.500
MGP_FVBNJ_G0024168	Pabpc2	61	34.940	MGP_FVBNJ_G0034229	Elavl3	90	34.940
MGP_FVBNJ_G0024168	Pabpc2	50	35.036	MGP_FVBNJ_G0032858	Tial1	92	32.500
MGP_FVBNJ_G0024168	Pabpc2	63	38.554	MGP_FVBNJ_G0017395	Celf5	98	38.554
MGP_FVBNJ_G0024168	Pabpc2	100	76.101	MGP_FVBNJ_G0021609	Pabpc1	100	76.101
MGP_FVBNJ_G0024168	Pabpc2	98	73.563	MGP_FVBNJ_G0026836	-	99	73.563
MGP_FVBNJ_G0024168	Pabpc2	99	65.023	MGP_FVBNJ_G0028517	Pabpc4	100	87.681
MGP_FVBNJ_G0024168	Pabpc2	59	34.667	MGP_FVBNJ_G0029769	Rbm19	70	34.667
MGP_FVBNJ_G0024168	Pabpc2	57	35.443	MGP_FVBNJ_G0030747	Tia1	95	33.835
MGP_FVBNJ_G0024168	Pabpc2	61	64.167	MGP_FVBNJ_G0026984	Pabpc4l	95	68.098
MGP_FVBNJ_G0024168	Pabpc2	59	34.940	MGP_FVBNJ_G0028357	Elavl4	88	34.940
MGP_FVBNJ_G0024168	Pabpc2	62	60.955	MGP_FVBNJ_G0035793	Pabpc5	96	61.111
MGP_FVBNJ_G0024168	Pabpc2	59	36.145	MGP_FVBNJ_G0028225	Elavl2	89	36.145
MGP_FVBNJ_G0024168	Pabpc2	98	56.938	MGP_FVBNJ_G0026632	Pabpc1l	99	56.938
MGP_FVBNJ_G0024168	Pabpc2	99	69.876	MGP_FVBNJ_G0022945	Pabpc6	99	70.186