EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0025569 (Gene tree)
Gene ID: -
Gene Symbol: Rbms1
Alias: 2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|Mssp|Mssp1|YC1
Full Name: RNA binding motif%2C single stranded interacting protein 1
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 216356 bases
Position: chr2:57169818-57386173
Accession: 1861774
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0054647	RRM_1	PF00076.22	1.4e-32	1	2
MGP_FVBNJ_P0054647	RRM_1	PF00076.22	1.4e-32	2	2
MGP_FVBNJ_P0054645	RRM_1	PF00076.22	1.7e-32	1	2
MGP_FVBNJ_P0054645	RRM_1	PF00076.22	1.7e-32	2	2
MGP_FVBNJ_P0054646	RRM_1	PF00076.22	1.8e-32	1	2
MGP_FVBNJ_P0054646	RRM_1	PF00076.22	1.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0054649	-	757	-	-	- (aa)	-	-
MGP_FVBNJ_T0054648	-	644	-	-	- (aa)	-	-
MGP_FVBNJ_T0054650	-	224	-	-	- (aa)	-	-
MGP_FVBNJ_T0054651	-	217	-	-	- (aa)	-	-
MGP_FVBNJ_T0054652	-	202	-	-	- (aa)	-	-
MGP_FVBNJ_T0054653	-	123	-	-	- (aa)	-	-
MGP_FVBNJ_T0054647	-	1801	-	MGP_FVBNJ_P0054647	386 (aa)	-	-
MGP_FVBNJ_T0054646	-	2538	-	MGP_FVBNJ_P0054646	417 (aa)	-	-
MGP_FVBNJ_T0054645	-	4282	XM_006499940	MGP_FVBNJ_P0054645	403 (aa)	XP_006500003	Q91W59

Gene Model

Click here to download MGP_FVBNJ_G0025569's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0025569's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0025569	Rbms1	99	66.753	MGP_FVBNJ_G0017682	Rbms2	86	71.758
MGP_FVBNJ_G0025569	Rbms1	51	37.209	MGP_FVBNJ_G0028225	Elavl2	60	41.558
MGP_FVBNJ_G0025569	Rbms1	51	33.645	MGP_FVBNJ_G0034229	Elavl3	50	36.207
MGP_FVBNJ_G0025569	Rbms1	53	32.773	MGP_FVBNJ_G0028357	Elavl4	70	36.458
MGP_FVBNJ_G0025569	Rbms1	96	71.538	MGP_FVBNJ_G0035158	Rbms3	99	80.841