EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0026249 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp200
Alias: A330064G03Rik|Ascc3l1|BC011390|HELIC2|Kiaa0788|U5-200-KD|U5-200KD
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 32333 bases
Position: chr2:123248113-123280445
Accession: 2444401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0057176	ResIII	PF04851.15	3.1e-25	1	2
MGP_FVBNJ_P0057176	ResIII	PF04851.15	3.1e-25	2	2
MGP_FVBNJ_P0057176	DEAD	PF00270.29	4.1e-52	1	2
MGP_FVBNJ_P0057176	DEAD	PF00270.29	4.1e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0057175	-	2900	-	-	- (aa)	-	-
MGP_FVBNJ_T0057176	-	6745	-	MGP_FVBNJ_P0057176	2136 (aa)	-	-
MGP_FVBNJ_T0057177	-	593	-	-	- (aa)	-	-
MGP_FVBNJ_T0057178	-	722	-	-	- (aa)	-	-
MGP_FVBNJ_T0057179	-	741	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0026249's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0026249's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0026249	Snrnp200	76	32.293	MGP_FVBNJ_G0029601	Hfm1	59	32.564
MGP_FVBNJ_G0026249	Snrnp200	86	42.051	MGP_FVBNJ_G0017043	Ascc3	81	44.301