EuRBPDB

Description

Ensembl ID: MGP_FVBNJ_G0026559 (Gene tree)
Gene ID: -
Gene Symbol: Rbm39
Alias: 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|Caper|Caper alpha|R75070|Rnpc2|caper
Full Name: RNA binding motif protein 39
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 33533 bases
Position: chr2:152167493-152201025
Accession: 2157953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0058433	RRM_1	PF00076.22	1.2e-41	1	2
MGP_FVBNJ_P0058433	RRM_1	PF00076.22	1.2e-41	2	2
MGP_FVBNJ_P0058434	RRM_1	PF00076.22	1.7e-41	1	2
MGP_FVBNJ_P0058434	RRM_1	PF00076.22	1.7e-41	2	2
MGP_FVBNJ_P0058435	RRM_1	PF00076.22	1.7e-41	1	2
MGP_FVBNJ_P0058435	RRM_1	PF00076.22	1.7e-41	2	2
MGP_FVBNJ_P0058439	RRM_1	PF00076.22	2.2e-22	1	1
MGP_FVBNJ_P0058440	RRM_1	PF00076.22	9.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0058452	-	743	-	MGP_FVBNJ_P0058452	40 (aa)	-	-
MGP_FVBNJ_T0058453	-	667	-	MGP_FVBNJ_P0058453	38 (aa)	-	-
MGP_FVBNJ_T0058449	-	593	-	MGP_FVBNJ_P0058449	39 (aa)	-	-
MGP_FVBNJ_T0058448	-	707	-	MGP_FVBNJ_P0058448	40 (aa)	-	-
MGP_FVBNJ_T0058445	-	497	-	-	- (aa)	-	-
MGP_FVBNJ_T0058444	-	754	-	MGP_FVBNJ_P0058444	156 (aa)	-	-
MGP_FVBNJ_T0058447	-	685	-	-	- (aa)	-	-
MGP_FVBNJ_T0058446	-	714	-	-	- (aa)	-	-
MGP_FVBNJ_T0058441	-	695	-	-	- (aa)	-	-
MGP_FVBNJ_T0058440	-	1090	-	MGP_FVBNJ_P0058440	273 (aa)	-	-
MGP_FVBNJ_T0058443	-	1481	-	-	- (aa)	-	-
MGP_FVBNJ_T0058442	-	546	-	-	- (aa)	-	-
MGP_FVBNJ_T0058434	-	2580	-	MGP_FVBNJ_P0058434	524 (aa)	-	-
MGP_FVBNJ_T0058435	-	2711	-	MGP_FVBNJ_P0058435	524 (aa)	-	-
MGP_FVBNJ_T0058436	-	2744	-	MGP_FVBNJ_P0058436	415 (aa)	-	-
MGP_FVBNJ_T0058437	-	2120	-	MGP_FVBNJ_P0058437	40 (aa)	-	-
MGP_FVBNJ_T0058433	-	2810	XM_006498832	MGP_FVBNJ_P0058433	530 (aa)	XP_006498895	Q8VH51
MGP_FVBNJ_T0058456	-	1008	-	-	- (aa)	-	-
MGP_FVBNJ_T0058457	-	715	-	-	- (aa)	-	-
MGP_FVBNJ_T0058454	-	672	-	-	- (aa)	-	-
MGP_FVBNJ_T0058455	-	699	-	MGP_FVBNJ_P0058455	40 (aa)	-	-
MGP_FVBNJ_T0058438	-	2127	-	MGP_FVBNJ_P0058438	47 (aa)	-	-
MGP_FVBNJ_T0058439	-	931	-	MGP_FVBNJ_P0058439	310 (aa)	-	-
MGP_FVBNJ_T0058450	-	710	-	-	- (aa)	-	-
MGP_FVBNJ_T0058451	-	585	-	MGP_FVBNJ_P0058451	62 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0026559	Rbm39	52	34.483	MGP_FVBNJ_G0017327	Dazap1	94	34.483