EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0026609 (Gene tree)
Gene ID: -
Gene Symbol: Chd6
Alias: 5430439G14Rik|6330406J24Rik|CHD-6|Kiaa1335
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 160700 bases
Position: chr2:157055763-157216462
Accession: 1918639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0058717	ResIII	PF04851.15	4.2e-08	1	1
MGP_FVBNJ_P0058713	ResIII	PF04851.15	2.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0058719	-	3092	-	-	- (aa)	-	-
MGP_FVBNJ_T0058718	-	601	-	-	- (aa)	-	-
MGP_FVBNJ_T0058720	-	616	-	-	- (aa)	-	-
MGP_FVBNJ_T0058713	-	10515	XM_006500181	MGP_FVBNJ_P0058713	2711 (aa)	XP_011238078	A3KFM7
MGP_FVBNJ_T0058721	-	646	-	-	- (aa)	-	-
MGP_FVBNJ_T0058715	-	764	-	-	- (aa)	-	-
MGP_FVBNJ_T0058714	-	735	-	-	- (aa)	-	-
MGP_FVBNJ_T0058717	-	3608	-	MGP_FVBNJ_P0058717	1183 (aa)	-	-
MGP_FVBNJ_T0058716	-	3970	-	-	- (aa)	-	-
MGP_FVBNJ_T0058722	-	675	-	MGP_FVBNJ_P0058722	217 (aa)	-	-
MGP_FVBNJ_T0058723	-	5051	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0026609's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0026609's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0026609	Chd6	87	68.979	MGP_FVBNJ_G0033689	Chd9	72	62.298
MGP_FVBNJ_G0026609	Chd6	84	72.837	MGP_FVBNJ_G0027822	Chd7	72	64.905
MGP_FVBNJ_G0026609	Chd6	66	36.621	MGP_FVBNJ_G0028958	Chd5	51	34.657
MGP_FVBNJ_G0026609	Chd6	61	37.625	MGP_FVBNJ_G0032149	Chd2	63	32.583