EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0026611 (Gene tree)
Gene ID: -
Gene Symbol: Srsf6
Alias: 1210001E11Rik|AI314910|AW146126|Sfrs6|Srp55
Full Name: serine/arginine-rich splicing factor 6
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 5508 bases
Position: chr2:159004375-159009882
Accession: 1915246
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0058731	RRM_1	PF00076.22	8.2e-32	1	2
MGP_FVBNJ_P0058731	RRM_1	PF00076.22	8.2e-32	2	2
MGP_FVBNJ_P0058733	RRM_1	PF00076.22	2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0058733	-	515	-	MGP_FVBNJ_P0058733	135 (aa)	-	-
MGP_FVBNJ_T0058732	-	1666	-	MGP_FVBNJ_P0058732	135 (aa)	-	-
MGP_FVBNJ_T0058731	-	3530	-	MGP_FVBNJ_P0058731	339 (aa)	-	-
MGP_FVBNJ_T0058730	-	2897	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0026611's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0026611's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0026611	Srsf6	61	31.868	MGP_FVBNJ_G0017321	Cirbp	84	31.868
MGP_FVBNJ_G0026611	Srsf6	50	71.642	MGP_FVBNJ_G0019710	Srsf5	89	63.415
MGP_FVBNJ_G0026611	Srsf6	56	35.526	MGP_FVBNJ_G0026524	Raly	54	35.526
MGP_FVBNJ_G0026611	Srsf6	56	39.744	MGP_FVBNJ_G0021698	-	60	39.744
MGP_FVBNJ_G0026611	Srsf6	58	40.670	MGP_FVBNJ_G0018742	Srsf1	82	42.857
MGP_FVBNJ_G0026611	Srsf6	51	47.297	MGP_FVBNJ_G0029734	Srsf9	70	38.674
MGP_FVBNJ_G0026611	Srsf6	53	35.443	MGP_FVBNJ_G0035499	Rbmx	77	35.443