EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0026632 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 27703 bases
Position: chr2:160093925-160121627
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0058804	PABP	PF00658.18	1.8e-23	1	1
MGP_FVBNJ_P0058804	RRM_5	PF13893.6	3.2e-17	1	3
MGP_FVBNJ_P0058804	RRM_5	PF13893.6	3.2e-17	2	3
MGP_FVBNJ_P0058804	RRM_5	PF13893.6	3.2e-17	3	3
MGP_FVBNJ_P0058804	RRM_1	PF00076.22	3.5e-90	1	4
MGP_FVBNJ_P0058804	RRM_1	PF00076.22	3.5e-90	2	4
MGP_FVBNJ_P0058804	RRM_1	PF00076.22	3.5e-90	3	4
MGP_FVBNJ_P0058804	RRM_1	PF00076.22	3.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0058805	-	617	-	-	- (aa)	-	-
MGP_FVBNJ_T0058804	-	2354	XM_006499825	MGP_FVBNJ_P0058804	607 (aa)	XP_006499888	A2A5N3
MGP_FVBNJ_T0058807	-	750	-	-	- (aa)	-	-
MGP_FVBNJ_T0058806	-	438	-	-	- (aa)	-	-
MGP_FVBNJ_T0058808	-	328	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0026632's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0026632's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0026632	Pabpc1l	57	34.118	MGP_FVBNJ_G0027344	Celf3	67	32.857
MGP_FVBNJ_G0026632	Pabpc1l	99	56.938	MGP_FVBNJ_G0024168	Pabpc2	98	56.938
MGP_FVBNJ_G0026632	Pabpc1l	59	38.095	MGP_FVBNJ_G0030747	Tia1	87	38.095
MGP_FVBNJ_G0026632	Pabpc1l	59	60.736	MGP_FVBNJ_G0026984	Pabpc4l	95	60.736
MGP_FVBNJ_G0026632	Pabpc1l	99	58.833	MGP_FVBNJ_G0028517	Pabpc4	100	79.710
MGP_FVBNJ_G0026632	Pabpc1l	99	56.467	MGP_FVBNJ_G0022945	Pabpc6	97	56.625
MGP_FVBNJ_G0026632	Pabpc1l	56	30.864	MGP_FVBNJ_G0020438	Hnrnpa0	92	31.447
MGP_FVBNJ_G0026632	Pabpc1l	53	39.759	MGP_FVBNJ_G0017321	Cirbp	91	39.759
MGP_FVBNJ_G0026632	Pabpc1l	63	38.889	MGP_FVBNJ_G0034229	Elavl3	59	30.488
MGP_FVBNJ_G0026632	Pabpc1l	53	34.884	MGP_FVBNJ_G0025138	Celf2	57	34.884
MGP_FVBNJ_G0026632	Pabpc1l	60	35.870	MGP_FVBNJ_G0017395	Celf5	63	35.870
MGP_FVBNJ_G0026632	Pabpc1l	60	35.484	MGP_FVBNJ_G0029769	Rbm19	72	36.066
MGP_FVBNJ_G0026632	Pabpc1l	62	33.735	MGP_FVBNJ_G0028357	Elavl4	89	33.735
MGP_FVBNJ_G0026632	Pabpc1l	59	30.818	MGP_FVBNJ_G0035158	Rbms3	77	30.818
MGP_FVBNJ_G0026632	Pabpc1l	64	34.940	MGP_FVBNJ_G0028225	Elavl2	92	34.940
MGP_FVBNJ_G0026632	Pabpc1l	99	57.953	MGP_FVBNJ_G0021609	Pabpc1	98	58.110
MGP_FVBNJ_G0026632	Pabpc1l	97	68.362	MGP_FVBNJ_G0026836	-	96	68.362
MGP_FVBNJ_G0026632	Pabpc1l	64	57.022	MGP_FVBNJ_G0035793	Pabpc5	96	56.944