EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0026728 (Gene tree)
Gene ID: -
Gene Symbol: Sall4
Alias: 5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20
Full Name: sal-like 4 (Drosophila)
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 19702 bases
Position: chr2:165068726-165088427
Accession: 2139360
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0059197	zf-C2H2	PF00096.26	1.4e-29	1	6
MGP_FVBNJ_P0059197	zf-C2H2	PF00096.26	1.4e-29	2	6
MGP_FVBNJ_P0059197	zf-C2H2	PF00096.26	1.4e-29	3	6
MGP_FVBNJ_P0059197	zf-C2H2	PF00096.26	1.4e-29	4	6
MGP_FVBNJ_P0059197	zf-C2H2	PF00096.26	1.4e-29	5	6
MGP_FVBNJ_P0059197	zf-C2H2	PF00096.26	1.4e-29	6	6
MGP_FVBNJ_P0059199	zf-C2H2	PF00096.26	2e-13	1	2
MGP_FVBNJ_P0059199	zf-C2H2	PF00096.26	2e-13	2	2
MGP_FVBNJ_P0059198	zf-C2H2	PF00096.26	3.2e-11	1	2
MGP_FVBNJ_P0059198	zf-C2H2	PF00096.26	3.2e-11	2	2
MGP_FVBNJ_P0059196	zf-C2H2	PF00096.26	3.3e-08	1	2
MGP_FVBNJ_P0059196	zf-C2H2	PF00096.26	3.3e-08	2	2
MGP_FVBNJ_P0059197	zf-met	PF12874.7	2.3e-11	1	1
MGP_FVBNJ_P0059199	zf-met	PF12874.7	1.4e-09	1	2
MGP_FVBNJ_P0059199	zf-met	PF12874.7	1.4e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0059198	-	2528	-	MGP_FVBNJ_P0059198	278 (aa)	-	-
MGP_FVBNJ_T0059199	-	393	-	MGP_FVBNJ_P0059199	131 (aa)	-	-
MGP_FVBNJ_T0059196	-	3735	XM_006500486	MGP_FVBNJ_P0059196	623 (aa)	XP_006500549	Q8BX22
MGP_FVBNJ_T0059197	-	5067	-	MGP_FVBNJ_P0059197	1067 (aa)	-	-
MGP_FVBNJ_T0059200	-	773	-	MGP_FVBNJ_P0059200	215 (aa)	-	-
MGP_FVBNJ_T0059201	-	423	-	-	- (aa)	-	-
MGP_FVBNJ_T0059202	-	328	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0026728's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0026728's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0026728	Sall4	73	53.333	MGP_FVBNJ_G0024402	Zfp236	81	53.333
MGP_FVBNJ_G0026728	Sall4	100	64.706	MGP_FVBNJ_G0033686	Sall1	95	64.706
MGP_FVBNJ_G0026728	Sall4	98	84.507	MGP_FVBNJ_G0024399	Sall3	66	65.385