EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0026984 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 6024 bases
Position: chr3:42205908-42211931
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0060411	RRM_5	PF13893.6	1.6e-13	1	3
MGP_FVBNJ_P0060411	RRM_5	PF13893.6	1.6e-13	2	3
MGP_FVBNJ_P0060411	RRM_5	PF13893.6	1.6e-13	3	3
MGP_FVBNJ_P0060412	RRM_5	PF13893.6	1.6e-13	1	3
MGP_FVBNJ_P0060412	RRM_5	PF13893.6	1.6e-13	2	3
MGP_FVBNJ_P0060412	RRM_5	PF13893.6	1.6e-13	3	3
MGP_FVBNJ_P0060411	RRM_1	PF00076.22	4.7e-83	1	4
MGP_FVBNJ_P0060411	RRM_1	PF00076.22	4.7e-83	2	4
MGP_FVBNJ_P0060411	RRM_1	PF00076.22	4.7e-83	3	4
MGP_FVBNJ_P0060411	RRM_1	PF00076.22	4.7e-83	4	4
MGP_FVBNJ_P0060412	RRM_1	PF00076.22	4.7e-83	1	4
MGP_FVBNJ_P0060412	RRM_1	PF00076.22	4.7e-83	2	4
MGP_FVBNJ_P0060412	RRM_1	PF00076.22	4.7e-83	3	4
MGP_FVBNJ_P0060412	RRM_1	PF00076.22	4.7e-83	4	4
MGP_FVBNJ_P0060413	RRM_1	PF00076.22	1.8e-40	1	2
MGP_FVBNJ_P0060413	RRM_1	PF00076.22	1.8e-40	2	2
MGP_FVBNJ_P0060414	RRM_1	PF00076.22	1.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0060411	-	5253	XM_006500774	MGP_FVBNJ_P0060411	370 (aa)	XP_006500837	A0A0A6YWT2
MGP_FVBNJ_T0060413	-	724	-	MGP_FVBNJ_P0060413	172 (aa)	-	-
MGP_FVBNJ_T0060412	-	5219	-	MGP_FVBNJ_P0060412	370 (aa)	-	-
MGP_FVBNJ_T0060414	-	468	-	MGP_FVBNJ_P0060414	50 (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0026984's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0026984's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0026984	Pabpc4l	95	30.539	MGP_FVBNJ_G0030747	Tia1	95	30.000
MGP_FVBNJ_G0026984	Pabpc4l	52	31.461	MGP_FVBNJ_G0028728	Srsf10	50	32.500
MGP_FVBNJ_G0026984	Pabpc4l	98	70.552	MGP_FVBNJ_G0028517	Pabpc4	100	70.370
MGP_FVBNJ_G0026984	Pabpc4l	95	60.736	MGP_FVBNJ_G0026632	Pabpc1l	59	60.736
MGP_FVBNJ_G0026984	Pabpc4l	96	30.065	MGP_FVBNJ_G0028357	Elavl4	70	35.484
MGP_FVBNJ_G0026984	Pabpc4l	98	64.497	MGP_FVBNJ_G0022945	Pabpc6	58	64.497
MGP_FVBNJ_G0026984	Pabpc4l	94	30.464	MGP_FVBNJ_G0033102	Elavl1	91	30.464
MGP_FVBNJ_G0026984	Pabpc4l	97	57.865	MGP_FVBNJ_G0035793	Pabpc5	96	57.967
MGP_FVBNJ_G0026984	Pabpc4l	94	33.333	MGP_FVBNJ_G0032858	Tial1	99	31.618
MGP_FVBNJ_G0026984	Pabpc4l	65	34.211	MGP_FVBNJ_G0025935	Celf1	57	37.879
MGP_FVBNJ_G0026984	Pabpc4l	96	38.068	MGP_FVBNJ_G0027397	Sf3b4	54	38.068
MGP_FVBNJ_G0026984	Pabpc4l	96	36.145	MGP_FVBNJ_G0034229	Elavl3	90	36.145
MGP_FVBNJ_G0026984	Pabpc4l	83	34.286	MGP_FVBNJ_G0035297	Rbm3	90	35.385
MGP_FVBNJ_G0026984	Pabpc4l	96	34.940	MGP_FVBNJ_G0028225	Elavl2	89	34.940
MGP_FVBNJ_G0026984	Pabpc4l	97	69.277	MGP_FVBNJ_G0021609	Pabpc1	55	69.277
MGP_FVBNJ_G0026984	Pabpc4l	89	31.875	MGP_FVBNJ_G0028646	Trnau1ap	88	34.211
MGP_FVBNJ_G0026984	Pabpc4l	95	68.098	MGP_FVBNJ_G0024168	Pabpc2	61	64.167