EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0027344 (Gene tree)
Gene ID: -
Gene Symbol: Celf3
Alias: 4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4
Full Name: CUGBP%2C Elav-like family member 3
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 14777 bases
Position: chr3:89527239-89542015
Accession: 1926034
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0061912	RRM_1	PF00076.22	9.2e-54	1	3
MGP_FVBNJ_P0061912	RRM_1	PF00076.22	9.2e-54	2	3
MGP_FVBNJ_P0061912	RRM_1	PF00076.22	9.2e-54	3	3
MGP_FVBNJ_P0061911	RRM_1	PF00076.22	1.5e-53	1	3
MGP_FVBNJ_P0061911	RRM_1	PF00076.22	1.5e-53	2	3
MGP_FVBNJ_P0061911	RRM_1	PF00076.22	1.5e-53	3	3
MGP_FVBNJ_P0061913	RRM_1	PF00076.22	2e-53	1	3
MGP_FVBNJ_P0061913	RRM_1	PF00076.22	2e-53	2	3
MGP_FVBNJ_P0061913	RRM_1	PF00076.22	2e-53	3	3
MGP_FVBNJ_P0061918	RRM_1	PF00076.22	6.8e-16	1	1
MGP_FVBNJ_P0061919	RRM_1	PF00076.22	1.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0061921	-	889	-	-	- (aa)	-	-
MGP_FVBNJ_T0061920	-	3372	-	-	- (aa)	-	-
MGP_FVBNJ_T0061922	-	855	-	-	- (aa)	-	-
MGP_FVBNJ_T0061919	-	726	-	MGP_FVBNJ_P0061919	231 (aa)	-	-
MGP_FVBNJ_T0061918	-	779	-	MGP_FVBNJ_P0061918	182 (aa)	-	-
MGP_FVBNJ_T0061913	-	2562	-	MGP_FVBNJ_P0061913	494 (aa)	-	-
MGP_FVBNJ_T0061912	-	2354	-	MGP_FVBNJ_P0061912	416 (aa)	-	-
MGP_FVBNJ_T0061911	-	2747	-	MGP_FVBNJ_P0061911	465 (aa)	-	-
MGP_FVBNJ_T0061910	-	365	XM_006502323	MGP_FVBNJ_P0061910	31 (aa)	XP_006502386	Q8CIN6
MGP_FVBNJ_T0061917	-	2935	-	-	- (aa)	-	-
MGP_FVBNJ_T0061916	-	2444	-	-	- (aa)	-	-
MGP_FVBNJ_T0061915	-	669	-	-	- (aa)	-	-
MGP_FVBNJ_T0061914	-	1193	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0027344's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0027344's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0027344	Celf3	99	45.783	MGP_FVBNJ_G0025138	Celf2	94	83.333
MGP_FVBNJ_G0027344	Celf3	80	37.500	MGP_FVBNJ_G0022945	Pabpc6	72	36.585
MGP_FVBNJ_G0027344	Celf3	100	66.848	MGP_FVBNJ_G0017395	Celf5	100	65.032
MGP_FVBNJ_G0027344	Celf3	81	87.368	MGP_FVBNJ_G0034657	Celf6	75	85.526
MGP_FVBNJ_G0027344	Celf3	99	43.830	MGP_FVBNJ_G0025935	Celf1	97	43.320
MGP_FVBNJ_G0027344	Celf3	61	40.741	MGP_FVBNJ_G0028357	Elavl4	85	40.741
MGP_FVBNJ_G0027344	Celf3	100	69.072	MGP_FVBNJ_G0024008	Celf4	97	65.971
MGP_FVBNJ_G0027344	Celf3	98	35.632	MGP_FVBNJ_G0033102	Elavl1	95	44.444
MGP_FVBNJ_G0027344	Celf3	67	32.857	MGP_FVBNJ_G0026632	Pabpc1l	57	34.118
MGP_FVBNJ_G0027344	Celf3	76	38.462	MGP_FVBNJ_G0030747	Tia1	93	38.667
MGP_FVBNJ_G0027344	Celf3	69	34.247	MGP_FVBNJ_G0028517	Pabpc4	50	32.394
MGP_FVBNJ_G0027344	Celf3	98	35.632	MGP_FVBNJ_G0034229	Elavl3	89	34.940
MGP_FVBNJ_G0027344	Celf3	70	34.091	MGP_FVBNJ_G0032858	Tial1	81	37.333
MGP_FVBNJ_G0027344	Celf3	63	41.975	MGP_FVBNJ_G0028225	Elavl2	76	41.975
MGP_FVBNJ_G0027344	Celf3	94	40.278	MGP_FVBNJ_G0035158	Rbms3	81	39.474