EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0027771 (Gene tree)
Gene ID: -
Gene Symbol: Fubp1
Alias: 9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4
Full Name: far upstream element (FUSE) binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 26364 bases
Position: chr3:146886766-146913129
Accession: 1196294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0063992	KH_1	PF00013.29	7.1e-70	1	4
MGP_FVBNJ_P0063992	KH_1	PF00013.29	7.1e-70	2	4
MGP_FVBNJ_P0063992	KH_1	PF00013.29	7.1e-70	3	4
MGP_FVBNJ_P0063992	KH_1	PF00013.29	7.1e-70	4	4
MGP_FVBNJ_P0063989	KH_1	PF00013.29	2.2e-69	1	4
MGP_FVBNJ_P0063989	KH_1	PF00013.29	2.2e-69	2	4
MGP_FVBNJ_P0063989	KH_1	PF00013.29	2.2e-69	3	4
MGP_FVBNJ_P0063989	KH_1	PF00013.29	2.2e-69	4	4
MGP_FVBNJ_P0063995	KH_1	PF00013.29	2.2e-69	1	4
MGP_FVBNJ_P0063995	KH_1	PF00013.29	2.2e-69	2	4
MGP_FVBNJ_P0063995	KH_1	PF00013.29	2.2e-69	3	4
MGP_FVBNJ_P0063995	KH_1	PF00013.29	2.2e-69	4	4
MGP_FVBNJ_P0063993	KH_1	PF00013.29	2.3e-69	1	4
MGP_FVBNJ_P0063993	KH_1	PF00013.29	2.3e-69	2	4
MGP_FVBNJ_P0063993	KH_1	PF00013.29	2.3e-69	3	4
MGP_FVBNJ_P0063993	KH_1	PF00013.29	2.3e-69	4	4
MGP_FVBNJ_P0063991	KH_1	PF00013.29	2.4e-69	1	4
MGP_FVBNJ_P0063991	KH_1	PF00013.29	2.4e-69	2	4
MGP_FVBNJ_P0063991	KH_1	PF00013.29	2.4e-69	3	4
MGP_FVBNJ_P0063991	KH_1	PF00013.29	2.4e-69	4	4
MGP_FVBNJ_P0063990	KH_1	PF00013.29	7.5e-38	1	2
MGP_FVBNJ_P0063990	KH_1	PF00013.29	7.5e-38	2	2
MGP_FVBNJ_P0063999	KH_1	PF00013.29	1.1e-16	1	1
MGP_FVBNJ_P0063992	KH_2	PF07650.17	1.3e-22	1	2
MGP_FVBNJ_P0063992	KH_2	PF07650.17	1.3e-22	2	2
MGP_FVBNJ_P0063995	KH_2	PF07650.17	3.3e-22	1	2
MGP_FVBNJ_P0063995	KH_2	PF07650.17	3.3e-22	2	2
MGP_FVBNJ_P0063993	KH_2	PF07650.17	3.5e-22	1	2
MGP_FVBNJ_P0063993	KH_2	PF07650.17	3.5e-22	2	2
MGP_FVBNJ_P0063991	KH_2	PF07650.17	3.6e-22	1	2
MGP_FVBNJ_P0063991	KH_2	PF07650.17	3.6e-22	2	2
MGP_FVBNJ_P0063989	KH_2	PF07650.17	3.6e-22	1	2
MGP_FVBNJ_P0063989	KH_2	PF07650.17	3.6e-22	2	2
MGP_FVBNJ_P0063990	KH_2	PF07650.17	3.8e-10	1	1
MGP_FVBNJ_P0063999	KH_2	PF07650.17	5.2e-06	1	1
MGP_FVBNJ_P0064003	DUF1897	PF09005.10	1.7e-12	1	2
MGP_FVBNJ_P0064003	DUF1897	PF09005.10	1.7e-12	2	2
MGP_FVBNJ_P0064001	DUF1897	PF09005.10	2.1e-12	1	2
MGP_FVBNJ_P0064001	DUF1897	PF09005.10	2.1e-12	2	2
MGP_FVBNJ_P0063989	DUF1897	PF09005.10	2.4e-11	1	2
MGP_FVBNJ_P0063989	DUF1897	PF09005.10	2.4e-11	2	2
MGP_FVBNJ_P0063995	DUF1897	PF09005.10	2.4e-11	1	2
MGP_FVBNJ_P0063995	DUF1897	PF09005.10	2.4e-11	2	2
MGP_FVBNJ_P0063993	DUF1897	PF09005.10	2.5e-11	1	2
MGP_FVBNJ_P0063993	DUF1897	PF09005.10	2.5e-11	2	2
MGP_FVBNJ_P0063991	DUF1897	PF09005.10	2.6e-11	1	2
MGP_FVBNJ_P0063991	DUF1897	PF09005.10	2.6e-11	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0064002	-	800	-	MGP_FVBNJ_P0064002	173 (aa)	-	-
MGP_FVBNJ_T0064003	-	809	-	MGP_FVBNJ_P0064003	156 (aa)	-	-
MGP_FVBNJ_T0064000	-	512	-	-	- (aa)	-	-
MGP_FVBNJ_T0064001	-	796	-	MGP_FVBNJ_P0064001	141 (aa)	-	-
MGP_FVBNJ_T0064006	-	3964	-	-	- (aa)	-	-
MGP_FVBNJ_T0064007	-	665	-	-	- (aa)	-	-
MGP_FVBNJ_T0064004	-	5099	-	-	- (aa)	-	-
MGP_FVBNJ_T0064005	-	424	-	-	- (aa)	-	-
MGP_FVBNJ_T0063995	-	2374	-	MGP_FVBNJ_P0063995	643 (aa)	-	-
MGP_FVBNJ_T0063994	-	2094	-	MGP_FVBNJ_P0063994	69 (aa)	-	-
MGP_FVBNJ_T0063997	-	4525	-	MGP_FVBNJ_P0063997	642 (aa)	-	-
MGP_FVBNJ_T0063996	-	4846	-	MGP_FVBNJ_P0063996	700 (aa)	-	-
MGP_FVBNJ_T0063991	-	2552	-	MGP_FVBNJ_P0063991	654 (aa)	-	-
MGP_FVBNJ_T0063990	-	1040	-	MGP_FVBNJ_P0063990	306 (aa)	-	-
MGP_FVBNJ_T0063993	-	2526	-	MGP_FVBNJ_P0063993	651 (aa)	-	-
MGP_FVBNJ_T0063992	-	3163	-	MGP_FVBNJ_P0063992	523 (aa)	-	-
MGP_FVBNJ_T0063999	-	585	-	MGP_FVBNJ_P0063999	149 (aa)	-	-
MGP_FVBNJ_T0063998	-	432	-	-	- (aa)	-	-
MGP_FVBNJ_T0063989	-	6523	XM_006501660	MGP_FVBNJ_P0063989	642 (aa)	XP_006501723	Q91WJ8

Gene Model

Click here to download MGP_FVBNJ_G0027771's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0027771's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0027771	Fubp1	72	34.524	MGP_FVBNJ_G0034992	Pcbp4	76	33.684
MGP_FVBNJ_G0027771	Fubp1	96	64.410	MGP_FVBNJ_G0023742	Khsrp	70	67.654
MGP_FVBNJ_G0027771	Fubp1	94	59.208	MGP_FVBNJ_G0025394	Fubp3	96	64.324
MGP_FVBNJ_G0027771	Fubp1	61	36.765	MGP_FVBNJ_G0031521	Nova2	54	36.765
MGP_FVBNJ_G0027771	Fubp1	61	36.765	MGP_FVBNJ_G0031520	-	56	36.765
MGP_FVBNJ_G0027771	Fubp1	50	36.364	MGP_FVBNJ_G0019534	Nova1	57	36.364
MGP_FVBNJ_G0027771	Fubp1	53	34.615	MGP_FVBNJ_G0020444	Hnrnpk	57	34.615
MGP_FVBNJ_G0027771	Fubp1	72	33.019	MGP_FVBNJ_G0017220	Pcbp3	66	31.250