EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0028119 (Gene tree)
Gene ID: -
Gene Symbol: Ptbp3
Alias: 5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1
Full Name: polypyrimidine tract binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 77448 bases
Position: chr4:55239560-55317007
Accession: 1923334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0065552	RRM_5	PF13893.6	1.1e-61	1	3
MGP_FVBNJ_P0065552	RRM_5	PF13893.6	1.1e-61	2	3
MGP_FVBNJ_P0065552	RRM_5	PF13893.6	1.1e-61	3	3
MGP_FVBNJ_P0065551	RRM_5	PF13893.6	1.2e-61	1	3
MGP_FVBNJ_P0065551	RRM_5	PF13893.6	1.2e-61	2	3
MGP_FVBNJ_P0065551	RRM_5	PF13893.6	1.2e-61	3	3
MGP_FVBNJ_P0065554	RRM_5	PF13893.6	1.3e-47	1	1
MGP_FVBNJ_P0065557	RRM_5	PF13893.6	7.1e-06	1	1
MGP_FVBNJ_P0065552	RRM_1	PF00076.22	2.1e-31	1	3
MGP_FVBNJ_P0065552	RRM_1	PF00076.22	2.1e-31	2	3
MGP_FVBNJ_P0065552	RRM_1	PF00076.22	2.1e-31	3	3
MGP_FVBNJ_P0065551	RRM_1	PF00076.22	2.2e-31	1	3
MGP_FVBNJ_P0065551	RRM_1	PF00076.22	2.2e-31	2	3
MGP_FVBNJ_P0065551	RRM_1	PF00076.22	2.2e-31	3	3
MGP_FVBNJ_P0065557	RRM_1	PF00076.22	2.8e-11	1	1
MGP_FVBNJ_P0065554	RRM_1	PF00076.22	3.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0065557	-	550	-	MGP_FVBNJ_P0065557	146 (aa)	-	-
MGP_FVBNJ_T0065556	-	558	-	MGP_FVBNJ_P0065556	41 (aa)	-	-
MGP_FVBNJ_T0065555	-	1286	-	MGP_FVBNJ_P0065555	45 (aa)	-	-
MGP_FVBNJ_T0065554	-	566	-	MGP_FVBNJ_P0065554	188 (aa)	-	-
MGP_FVBNJ_T0065553	-	669	-	-	- (aa)	-	-
MGP_FVBNJ_T0065552	-	3409	-	MGP_FVBNJ_P0065552	551 (aa)	-	-
MGP_FVBNJ_T0065551	-	6677	XM_006537851	MGP_FVBNJ_P0065551	554 (aa)	XP_006537914	Q8BHD7
MGP_FVBNJ_T0065559	-	606	-	MGP_FVBNJ_P0065559	104 (aa)	-	-
MGP_FVBNJ_T0065558	-	447	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0028119's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0028119's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0028119	Ptbp3	83	35.537	MGP_FVBNJ_G0031741	-	55	36.207
MGP_FVBNJ_G0028119	Ptbp3	91	78.195	MGP_FVBNJ_G0027611	Ptbp2	99	69.835