EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0028357 (Gene tree)
Gene ID: -
Gene Symbol: Elavl4
Alias: Elav|Hud|PNEM
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 4 (Hu antigen D)
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 140869 bases
Position: chr4:105488148-105629016
Accession: 107427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0066603	RRM_5	PF13893.6	2.8e-13	1	2
MGP_FVBNJ_P0066603	RRM_5	PF13893.6	2.8e-13	2	2
MGP_FVBNJ_P0066602	RRM_5	PF13893.6	3.1e-13	1	2
MGP_FVBNJ_P0066602	RRM_5	PF13893.6	3.1e-13	2	2
MGP_FVBNJ_P0066607	RRM_5	PF13893.6	3.2e-13	1	2
MGP_FVBNJ_P0066607	RRM_5	PF13893.6	3.2e-13	2	2
MGP_FVBNJ_P0066605	RRM_5	PF13893.6	3.4e-13	1	2
MGP_FVBNJ_P0066605	RRM_5	PF13893.6	3.4e-13	2	2
MGP_FVBNJ_P0066604	RRM_5	PF13893.6	3.6e-13	1	2
MGP_FVBNJ_P0066604	RRM_5	PF13893.6	3.6e-13	2	2
MGP_FVBNJ_P0066608	RRM_5	PF13893.6	3.9e-13	1	2
MGP_FVBNJ_P0066608	RRM_5	PF13893.6	3.9e-13	2	2
MGP_FVBNJ_P0066606	RRM_5	PF13893.6	3.9e-13	1	2
MGP_FVBNJ_P0066606	RRM_5	PF13893.6	3.9e-13	2	2
MGP_FVBNJ_P0066603	RRM_1	PF00076.22	2.1e-65	1	3
MGP_FVBNJ_P0066603	RRM_1	PF00076.22	2.1e-65	2	3
MGP_FVBNJ_P0066603	RRM_1	PF00076.22	2.1e-65	3	3
MGP_FVBNJ_P0066607	RRM_1	PF00076.22	2.4e-65	1	3
MGP_FVBNJ_P0066607	RRM_1	PF00076.22	2.4e-65	2	3
MGP_FVBNJ_P0066607	RRM_1	PF00076.22	2.4e-65	3	3
MGP_FVBNJ_P0066602	RRM_1	PF00076.22	2.4e-65	1	3
MGP_FVBNJ_P0066602	RRM_1	PF00076.22	2.4e-65	2	3
MGP_FVBNJ_P0066602	RRM_1	PF00076.22	2.4e-65	3	3
MGP_FVBNJ_P0066605	RRM_1	PF00076.22	2.5e-65	1	3
MGP_FVBNJ_P0066605	RRM_1	PF00076.22	2.5e-65	2	3
MGP_FVBNJ_P0066605	RRM_1	PF00076.22	2.5e-65	3	3
MGP_FVBNJ_P0066604	RRM_1	PF00076.22	2.9e-65	1	3
MGP_FVBNJ_P0066604	RRM_1	PF00076.22	2.9e-65	2	3
MGP_FVBNJ_P0066604	RRM_1	PF00076.22	2.9e-65	3	3
MGP_FVBNJ_P0066608	RRM_1	PF00076.22	2.9e-65	1	3
MGP_FVBNJ_P0066608	RRM_1	PF00076.22	2.9e-65	2	3
MGP_FVBNJ_P0066608	RRM_1	PF00076.22	2.9e-65	3	3
MGP_FVBNJ_P0066606	RRM_1	PF00076.22	3e-65	1	3
MGP_FVBNJ_P0066606	RRM_1	PF00076.22	3e-65	2	3
MGP_FVBNJ_P0066606	RRM_1	PF00076.22	3e-65	3	3
MGP_FVBNJ_P0066610	RRM_1	PF00076.22	1.2e-20	1	1
MGP_FVBNJ_P0066612	RRM_1	PF00076.22	6.8e-13	1	1
MGP_FVBNJ_P0066613	RRM_1	PF00076.22	9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0066602	-	3997	XM_006502793	MGP_FVBNJ_P0066602	366 (aa)	XP_006502856	Q61701
MGP_FVBNJ_T0066603	-	3761	-	MGP_FVBNJ_P0066603	356 (aa)	-	-
MGP_FVBNJ_T0066613	-	488	-	MGP_FVBNJ_P0066613	92 (aa)	-	-
MGP_FVBNJ_T0066612	-	663	-	MGP_FVBNJ_P0066612	94 (aa)	-	-
MGP_FVBNJ_T0066606	-	4149	-	MGP_FVBNJ_P0066606	385 (aa)	-	-
MGP_FVBNJ_T0066607	-	3775	-	MGP_FVBNJ_P0066607	366 (aa)	-	-
MGP_FVBNJ_T0066604	-	4024	-	MGP_FVBNJ_P0066604	380 (aa)	-	-
MGP_FVBNJ_T0066605	-	4107	-	MGP_FVBNJ_P0066605	371 (aa)	-	-
MGP_FVBNJ_T0066608	-	3799	-	MGP_FVBNJ_P0066608	383 (aa)	-	-
MGP_FVBNJ_T0066609	-	869	-	-	- (aa)	-	-
MGP_FVBNJ_T0066610	-	644	-	MGP_FVBNJ_P0066610	137 (aa)	-	-
MGP_FVBNJ_T0066611	-	464	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0028357's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0028357's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0028357	Elavl4	94	35.897	MGP_FVBNJ_G0030747	Tia1	98	32.895
MGP_FVBNJ_G0028357	Elavl4	70	35.484	MGP_FVBNJ_G0026984	Pabpc4l	96	30.065
MGP_FVBNJ_G0028357	Elavl4	58	31.646	MGP_FVBNJ_G0035297	Rbm3	82	38.710
MGP_FVBNJ_G0028357	Elavl4	78	30.088	MGP_FVBNJ_G0018747	Msi2	84	30.208
MGP_FVBNJ_G0028357	Elavl4	88	35.897	MGP_FVBNJ_G0032858	Tial1	73	35.897
MGP_FVBNJ_G0028357	Elavl4	89	33.735	MGP_FVBNJ_G0026632	Pabpc1l	62	33.735
MGP_FVBNJ_G0028357	Elavl4	70	36.458	MGP_FVBNJ_G0025569	Rbms1	53	32.773
MGP_FVBNJ_G0028357	Elavl4	54	33.784	MGP_FVBNJ_G0027415	Rbm8a	62	30.693
MGP_FVBNJ_G0028357	Elavl4	90	30.625	MGP_FVBNJ_G0028517	Pabpc4	99	32.576
MGP_FVBNJ_G0028357	Elavl4	85	40.741	MGP_FVBNJ_G0027344	Celf3	61	40.741
MGP_FVBNJ_G0028357	Elavl4	88	34.940	MGP_FVBNJ_G0024168	Pabpc2	59	34.940
MGP_FVBNJ_G0028357	Elavl4	74	33.708	MGP_FVBNJ_G0035499	Rbmx	86	33.708
MGP_FVBNJ_G0028357	Elavl4	88	32.468	MGP_FVBNJ_G0022945	Pabpc6	60	32.468
MGP_FVBNJ_G0028357	Elavl4	85	40.741	MGP_FVBNJ_G0034657	Celf6	95	35.802
MGP_FVBNJ_G0028357	Elavl4	99	89.315	MGP_FVBNJ_G0028225	Elavl2	100	89.751
MGP_FVBNJ_G0028357	Elavl4	88	36.145	MGP_FVBNJ_G0021609	Pabpc1	54	36.145
MGP_FVBNJ_G0028357	Elavl4	70	36.458	MGP_FVBNJ_G0035158	Rbms3	83	37.097
MGP_FVBNJ_G0028357	Elavl4	54	33.784	MGP_FVBNJ_G0016682	Rbm8a2	61	30.693
MGP_FVBNJ_G0028357	Elavl4	70	38.889	MGP_FVBNJ_G0017321	Cirbp	84	38.889
MGP_FVBNJ_G0028357	Elavl4	66	42.373	MGP_FVBNJ_G0017327	Dazap1	64	30.275
MGP_FVBNJ_G0028357	Elavl4	81	38.272	MGP_FVBNJ_G0025138	Celf2	61	38.272
MGP_FVBNJ_G0028357	Elavl4	74	37.500	MGP_FVBNJ_G0017395	Celf5	61	38.095
MGP_FVBNJ_G0028357	Elavl4	72	35.821	MGP_FVBNJ_G0030492	Tra2a	59	37.097
MGP_FVBNJ_G0028357	Elavl4	88	38.272	MGP_FVBNJ_G0024008	Celf4	91	35.802
MGP_FVBNJ_G0028357	Elavl4	78	40.741	MGP_FVBNJ_G0025935	Celf1	62	40.741
MGP_FVBNJ_G0028357	Elavl4	89	73.585	MGP_FVBNJ_G0033102	Elavl1	98	73.585
MGP_FVBNJ_G0028357	Elavl4	99	79.893	MGP_FVBNJ_G0034229	Elavl3	99	80.323
MGP_FVBNJ_G0028357	Elavl4	57	37.037	MGP_FVBNJ_G0029866	Snrnp35	59	33.803