EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0028646 (Gene tree)
Gene ID: -
Gene Symbol: Trnau1ap
Alias: 1110007F05Rik|AA387999|SECp43|Secp43|Trspap1|WI1-2643G14.2
Full Name: tRNA selenocysteine 1 associated protein 1
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 18522 bases
Position: chr4:128138753-128157274
Accession: 1919037
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0067881	RRM_1	PF00076.22	9.8e-27	1	2
MGP_FVBNJ_P0067881	RRM_1	PF00076.22	9.8e-27	2	2
MGP_FVBNJ_P0067880	RRM_1	PF00076.22	3.3e-17	1	1
MGP_FVBNJ_P0067885	RRM_1	PF00076.22	1.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0067883	-	650	-	-	- (aa)	-	-
MGP_FVBNJ_T0067882	-	1793	-	-	- (aa)	-	-
MGP_FVBNJ_T0067881	-	1132	-	MGP_FVBNJ_P0067881	287 (aa)	-	-
MGP_FVBNJ_T0067880	-	963	XM_011250332	MGP_FVBNJ_P0067880	247 (aa)	XP_011248634	Q80VC6
MGP_FVBNJ_T0067887	-	553	-	-	- (aa)	-	-
MGP_FVBNJ_T0067886	-	600	-	MGP_FVBNJ_P0067886	47 (aa)	-	-
MGP_FVBNJ_T0067885	-	474	-	MGP_FVBNJ_P0067885	146 (aa)	-	-
MGP_FVBNJ_T0067884	-	1017	-	MGP_FVBNJ_P0067884	86 (aa)	-	-
MGP_FVBNJ_T0067889	-	679	-	-	- (aa)	-	-
MGP_FVBNJ_T0067888	-	663	-	MGP_FVBNJ_P0067888	49 (aa)	-	-
MGP_FVBNJ_T0067890	-	371	-	MGP_FVBNJ_P0067890	70 (aa)	-	-
MGP_FVBNJ_T0067891	-	621	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0028646's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0028646's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0028646	Trnau1ap	60	32.386	MGP_FVBNJ_G0032858	Tial1	73	33.019
MGP_FVBNJ_G0028646	Trnau1ap	79	30.198	MGP_FVBNJ_G0030747	Tia1	60	31.285
MGP_FVBNJ_G0028646	Trnau1ap	98	30.952	MGP_FVBNJ_G0028225	Elavl2	66	30.952
MGP_FVBNJ_G0028646	Trnau1ap	88	34.211	MGP_FVBNJ_G0026984	Pabpc4l	89	31.875