EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0028906 (Gene tree)
Gene ID: -
Gene Symbol: Tardbp
Alias: 1190002A23Rik|C85084|TARDBP|TDP-43|Tdp43
Full Name: TAR DNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 15175 bases
Position: chr4:145244728-145259902
Accession: 2387629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0068914	RRM_1	PF00076.22	1.2e-26	1	2
MGP_FVBNJ_P0068914	RRM_1	PF00076.22	1.2e-26	2	2
MGP_FVBNJ_P0068907	RRM_1	PF00076.22	4.3e-26	1	2
MGP_FVBNJ_P0068907	RRM_1	PF00076.22	4.3e-26	2	2
MGP_FVBNJ_P0068890	RRM_1	PF00076.22	4.5e-26	1	2
MGP_FVBNJ_P0068890	RRM_1	PF00076.22	4.5e-26	2	2
MGP_FVBNJ_P0068911	RRM_1	PF00076.22	4.5e-26	1	2
MGP_FVBNJ_P0068911	RRM_1	PF00076.22	4.5e-26	2	2
MGP_FVBNJ_P0068891	RRM_1	PF00076.22	4.8e-26	1	2
MGP_FVBNJ_P0068891	RRM_1	PF00076.22	4.8e-26	2	2
MGP_FVBNJ_P0068912	RRM_1	PF00076.22	4.8e-26	1	2
MGP_FVBNJ_P0068912	RRM_1	PF00076.22	4.8e-26	2	2
MGP_FVBNJ_P0068892	RRM_1	PF00076.22	4.9e-26	1	2
MGP_FVBNJ_P0068892	RRM_1	PF00076.22	4.9e-26	2	2
MGP_FVBNJ_P0068913	RRM_1	PF00076.22	4.9e-26	1	2
MGP_FVBNJ_P0068913	RRM_1	PF00076.22	4.9e-26	2	2
MGP_FVBNJ_P0068889	RRM_1	PF00076.22	1.2e-25	1	2
MGP_FVBNJ_P0068889	RRM_1	PF00076.22	1.2e-25	2	2
MGP_FVBNJ_P0068916	RRM_1	PF00076.22	4e-15	1	1
MGP_FVBNJ_P0068917	RRM_1	PF00076.22	4.9e-11	1	1
MGP_FVBNJ_P0068908	RRM_1	PF00076.22	6.6e-09	1	1
MGP_FVBNJ_P0068910	RRM_1	PF00076.22	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0068907	-	2118	-	MGP_FVBNJ_P0068907	295 (aa)	-	-
MGP_FVBNJ_T0068906	-	517	-	MGP_FVBNJ_P0068906	77 (aa)	-	-
MGP_FVBNJ_T0068905	-	1304	-	MGP_FVBNJ_P0068905	285 (aa)	-	-
MGP_FVBNJ_T0068904	-	684	-	MGP_FVBNJ_P0068904	137 (aa)	-	-
MGP_FVBNJ_T0068903	-	781	-	MGP_FVBNJ_P0068903	140 (aa)	-	-
MGP_FVBNJ_T0068902	-	741	-	MGP_FVBNJ_P0068902	175 (aa)	-	-
MGP_FVBNJ_T0068901	-	1011	-	MGP_FVBNJ_P0068901	34 (aa)	-	-
MGP_FVBNJ_T0068900	-	2006	-	MGP_FVBNJ_P0068900	298 (aa)	-	-
MGP_FVBNJ_T0068909	-	787	-	MGP_FVBNJ_P0068909	19 (aa)	-	-
MGP_FVBNJ_T0068908	-	577	-	MGP_FVBNJ_P0068908	128 (aa)	-	-
MGP_FVBNJ_T0068895	-	529	-	MGP_FVBNJ_P0068895	98 (aa)	-	-
MGP_FVBNJ_T0068894	-	731	-	-	- (aa)	-	-
MGP_FVBNJ_T0068897	-	908	-	-	- (aa)	-	-
MGP_FVBNJ_T0068896	-	676	-	MGP_FVBNJ_P0068896	88 (aa)	-	-
MGP_FVBNJ_T0068891	-	6727	-	MGP_FVBNJ_P0068891	304 (aa)	-	-
MGP_FVBNJ_T0068890	-	6709	-	MGP_FVBNJ_P0068890	298 (aa)	-	-
MGP_FVBNJ_T0068893	-	1773	-	MGP_FVBNJ_P0068893	298 (aa)	-	-
MGP_FVBNJ_T0068892	-	6639	-	MGP_FVBNJ_P0068892	302 (aa)	-	-
MGP_FVBNJ_T0068899	-	358	-	-	- (aa)	-	-
MGP_FVBNJ_T0068898	-	637	-	-	- (aa)	-	-
MGP_FVBNJ_T0068910	-	748	-	MGP_FVBNJ_P0068910	84 (aa)	-	-
MGP_FVBNJ_T0068911	-	1096	-	MGP_FVBNJ_P0068911	298 (aa)	-	-
MGP_FVBNJ_T0068912	-	1011	-	MGP_FVBNJ_P0068912	304 (aa)	-	-
MGP_FVBNJ_T0068913	-	923	-	MGP_FVBNJ_P0068913	302 (aa)	-	-
MGP_FVBNJ_T0068914	-	709	-	MGP_FVBNJ_P0068914	199 (aa)	-	-
MGP_FVBNJ_T0068915	-	1411	-	MGP_FVBNJ_P0068915	84 (aa)	-	-
MGP_FVBNJ_T0068916	-	818	-	MGP_FVBNJ_P0068916	243 (aa)	-	-
MGP_FVBNJ_T0068917	-	740	-	MGP_FVBNJ_P0068917	149 (aa)	-	-
MGP_FVBNJ_T0068918	-	370	-	-	- (aa)	-	-
MGP_FVBNJ_T0068889	-	7457	XM_011250237	MGP_FVBNJ_P0068889	414 (aa)	XP_011248539	Q921F2

Gene Model

Click here to download MGP_FVBNJ_G0028906's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0028906's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0028906	Tardbp	86	33.146	MGP_FVBNJ_G0018097	Hnrnpab	82	32.099
MGP_FVBNJ_G0028906	Tardbp	94	30.282	MGP_FVBNJ_G0030504	Hnrnpa2b1	66	30.348
MGP_FVBNJ_G0028906	Tardbp	77	38.194	MGP_FVBNJ_G0029552	Hnrnpd	100	64.000
MGP_FVBNJ_G0028906	Tardbp	77	31.447	MGP_FVBNJ_G0029554	Hnrnpdl	64	30.000
MGP_FVBNJ_G0028906	Tardbp	72	38.806	MGP_FVBNJ_G0033102	Elavl1	59	31.481
MGP_FVBNJ_G0028906	Tardbp	79	31.818	MGP_FVBNJ_G0018747	Msi2	100	35.398
MGP_FVBNJ_G0028906	Tardbp	80	36.508	MGP_FVBNJ_G0025662	Hnrnpa3	55	31.132
MGP_FVBNJ_G0028906	Tardbp	88	31.818	MGP_FVBNJ_G0017327	Dazap1	89	35.065
MGP_FVBNJ_G0028906	Tardbp	79	34.021	MGP_FVBNJ_G0029738	Msi1	62	34.021
MGP_FVBNJ_G0028906	Tardbp	92	35.000	MGP_FVBNJ_G0035499	Rbmx	78	35.000