EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0029552 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpd
Alias: Auf1|Hnrpd
Full Name: heterogeneous nuclear ribonucleoprotein D
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 22983 bases
Position: chr5:96636021-96659003
Accession: 101947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0072427	CBFNT	PF08143.11	1.2e-11	1	1
MGP_FVBNJ_P0072425	CBFNT	PF08143.11	1.3e-11	1	1
MGP_FVBNJ_P0072426	CBFNT	PF08143.11	1.6e-11	1	1
MGP_FVBNJ_P0072424	CBFNT	PF08143.11	1.7e-11	1	1
MGP_FVBNJ_P0072427	RRM_1	PF00076.22	7.3e-36	1	2
MGP_FVBNJ_P0072427	RRM_1	PF00076.22	7.3e-36	2	2
MGP_FVBNJ_P0072425	RRM_1	PF00076.22	8.9e-36	1	2
MGP_FVBNJ_P0072425	RRM_1	PF00076.22	8.9e-36	2	2
MGP_FVBNJ_P0072426	RRM_1	PF00076.22	1.2e-35	1	2
MGP_FVBNJ_P0072426	RRM_1	PF00076.22	1.2e-35	2	2
MGP_FVBNJ_P0072424	RRM_1	PF00076.22	1.4e-35	1	2
MGP_FVBNJ_P0072424	RRM_1	PF00076.22	1.4e-35	2	2
MGP_FVBNJ_P0072433	RRM_1	PF00076.22	2.3e-23	1	1
MGP_FVBNJ_P0072434	RRM_1	PF00076.22	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0072434	-	478	-	MGP_FVBNJ_P0072434	25 (aa)	-	-
MGP_FVBNJ_T0072429	-	737	-	MGP_FVBNJ_P0072429	150 (aa)	-	-
MGP_FVBNJ_T0072428	-	1117	-	MGP_FVBNJ_P0072428	215 (aa)	-	-
MGP_FVBNJ_T0072430	-	699	-	MGP_FVBNJ_P0072430	131 (aa)	-	-
MGP_FVBNJ_T0072431	-	1104	-	MGP_FVBNJ_P0072431	86 (aa)	-	-
MGP_FVBNJ_T0072432	-	425	-	-	- (aa)	-	-
MGP_FVBNJ_T0072433	-	493	-	MGP_FVBNJ_P0072433	107 (aa)	-	-
MGP_FVBNJ_T0072427	-	1537	-	MGP_FVBNJ_P0072427	287 (aa)	-	-
MGP_FVBNJ_T0072426	-	1670	-	MGP_FVBNJ_P0072426	336 (aa)	-	-
MGP_FVBNJ_T0072425	-	2000	-	MGP_FVBNJ_P0072425	306 (aa)	-	-
MGP_FVBNJ_T0072424	-	6810	XM_006534735	MGP_FVBNJ_P0072424	355 (aa)	XP_006534798	Q60668

Gene Model

Click here to download MGP_FVBNJ_G0029552's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0029552's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0029552	Hnrnpd	100	88.000	MGP_FVBNJ_G0018097	Hnrnpab	79	72.052
MGP_FVBNJ_G0029552	Hnrnpd	100	68.000	MGP_FVBNJ_G0029738	Msi1	59	49.485
MGP_FVBNJ_G0029552	Hnrnpd	69	35.294	MGP_FVBNJ_G0015880	Boll	51	34.783
MGP_FVBNJ_G0029552	Hnrnpd	70	32.000	MGP_FVBNJ_G0028225	Elavl2	58	31.169
MGP_FVBNJ_G0029552	Hnrnpd	71	33.333	MGP_FVBNJ_G0019803	Slirp	70	33.333
MGP_FVBNJ_G0029552	Hnrnpd	84	37.363	MGP_FVBNJ_G0035499	Rbmx	83	43.750
MGP_FVBNJ_G0029552	Hnrnpd	97	46.364	MGP_FVBNJ_G0025662	Hnrnpa3	60	43.204
MGP_FVBNJ_G0029552	Hnrnpd	84	36.559	MGP_FVBNJ_G0017321	Cirbp	83	38.776
MGP_FVBNJ_G0029552	Hnrnpd	100	56.000	MGP_FVBNJ_G0017327	Dazap1	98	41.935
MGP_FVBNJ_G0029552	Hnrnpd	100	72.000	MGP_FVBNJ_G0018747	Msi2	100	53.982
MGP_FVBNJ_G0029552	Hnrnpd	100	80.000	MGP_FVBNJ_G0029554	Hnrnpdl	89	65.278
MGP_FVBNJ_G0029552	Hnrnpd	100	64.000	MGP_FVBNJ_G0028906	Tardbp	77	38.194
MGP_FVBNJ_G0029552	Hnrnpd	55	35.593	MGP_FVBNJ_G0030747	Tia1	69	32.308
MGP_FVBNJ_G0029552	Hnrnpd	70	34.667	MGP_FVBNJ_G0035297	Rbm3	80	36.709
MGP_FVBNJ_G0029552	Hnrnpd	57	31.884	MGP_FVBNJ_G0029866	Snrnp35	57	31.884
MGP_FVBNJ_G0029552	Hnrnpd	51	36.364	MGP_FVBNJ_G0026751	Rbm38	51	36.364
MGP_FVBNJ_G0029552	Hnrnpd	97	44.545	MGP_FVBNJ_G0030504	Hnrnpa2b1	72	41.148
MGP_FVBNJ_G0029552	Hnrnpd	100	37.838	MGP_FVBNJ_G0020438	Hnrnpa0	72	36.458