EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0029738 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 26048 bases
Position: chr5:112503622-112529669
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0073328	RRM_1	PF00076.22	6.8e-33	1	2
MGP_FVBNJ_P0073328	RRM_1	PF00076.22	6.8e-33	2	2
MGP_FVBNJ_P0073329	RRM_1	PF00076.22	1.6e-28	1	2
MGP_FVBNJ_P0073329	RRM_1	PF00076.22	1.6e-28	2	2
MGP_FVBNJ_P0073333	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0073329	-	807	-	MGP_FVBNJ_P0073329	268 (aa)	-	-
MGP_FVBNJ_T0073328	-	2553	-	MGP_FVBNJ_P0073328	362 (aa)	-	-
MGP_FVBNJ_T0073327	-	2625	-	-	- (aa)	-	-
MGP_FVBNJ_T0073331	-	806	-	-	- (aa)	-	-
MGP_FVBNJ_T0073332	-	581	-	-	- (aa)	-	-
MGP_FVBNJ_T0073333	-	726	-	MGP_FVBNJ_P0073333	196 (aa)	-	-
MGP_FVBNJ_T0073334	-	599	-	-	- (aa)	-	-
MGP_FVBNJ_T0073330	-	367	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0029738's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0029738's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0029738	Msi1	61	51.064	MGP_FVBNJ_G0026751	Rbm38	66	46.809
MGP_FVBNJ_G0029738	Msi1	59	40.625	MGP_FVBNJ_G0025662	Hnrnpa3	70	38.258
MGP_FVBNJ_G0029738	Msi1	88	42.308	MGP_FVBNJ_G0017327	Dazap1	98	44.311
MGP_FVBNJ_G0029738	Msi1	51	38.983	MGP_FVBNJ_G0017321	Cirbp	87	40.351
MGP_FVBNJ_G0029738	Msi1	99	75.665	MGP_FVBNJ_G0018747	Msi2	100	90.323
MGP_FVBNJ_G0029738	Msi1	62	34.021	MGP_FVBNJ_G0028906	Tardbp	79	34.021
MGP_FVBNJ_G0029738	Msi1	57	42.949	MGP_FVBNJ_G0020438	Hnrnpa0	74	42.347
MGP_FVBNJ_G0029738	Msi1	61	43.750	MGP_FVBNJ_G0030504	Hnrnpa2b1	91	41.379
MGP_FVBNJ_G0029738	Msi1	58	48.052	MGP_FVBNJ_G0018097	Hnrnpab	79	40.800
MGP_FVBNJ_G0029738	Msi1	59	49.485	MGP_FVBNJ_G0029552	Hnrnpd	100	68.000
MGP_FVBNJ_G0029738	Msi1	58	48.052	MGP_FVBNJ_G0029554	Hnrnpdl	75	39.676
MGP_FVBNJ_G0029738	Msi1	56	41.379	MGP_FVBNJ_G0032858	Tial1	69	31.469